G138731


Basic Information

Item Value
gene id G138731
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3881551 ~ 3907123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187754
GGTTTGCTACAGCAGCAGTCCAGCAGAAACATGCCTGAGTGTCGCGGACGGGGACTGGCGGACTGGGAACGGGcgctttctcctcctctccccgGGTTTAAGTGaatgaaaaaggaaaaatgcgAATTTAGTGGGAATGGATACGAATTGAAAGCGTGTTCTCCGGGTCTGGTGGGCTCGCGGAGGCGTcggtgaagctgagagaagtgTGTGCTGGCTGAGATTTCGCCCAAACTCTGCTCTTCATGTTGCAAAGCCAAGGCTCATGACGATGgattatttgctgtttttatacaGCCTTCTGGTCCCTGTGGTCTCCGCCGTGGAGGAGACACTTATGGACAGCAAGTGGGCCACAACCGAGCTGGCGTGGACCACCTATCCAGAAAGTGGGATGGAGGagg

Function

NR:

description
tripartite motif-containing protein 16-like

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021532 neural tube patterning biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0048856 anatomical structure development biological_process
GO:0021915 neural tube development biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0060322 head development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187754 True 404 lncRNA 0.54 3 3881551 3907123

Neighbor

gene id symbol gene type direction distance location
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding upstream 282949 3585149 ~ 3598602 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding upstream 300425 3571143 ~ 3581126 (+)
fubp1 fubp1 coding upstream 312873 3554929 ~ 3568678 (+)
miga1 miga1,LOC107558173 coding upstream 328996 3536417 ~ 3552555 (+)
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding upstream 403990 3417426 ~ 3477561 (+)
LOC103021527 NA coding downstream 88819 3995942 ~ 4002916 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding downstream 115313 4022436 ~ 4046639 (+)
LOC103033521 b3gnt5 coding downstream 145607 4052730 ~ 4065474 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding downstream 168365 4075488 ~ 4080104 (+)
ccdc39 NA coding downstream 173889 4081012 ~ 4095442 (+)
G138671 NA non-coding upstream 128141 3720938 ~ 3753410 (+)
G138672 LOC105889432,LOC108437525,LOC108268022,LOC107722302,LOC107565821 non-coding upstream 148091 3732030 ~ 3733460 (+)
G138665 NA non-coding upstream 199621 3681726 ~ 3681930 (+)
G138663 NA non-coding upstream 211975 3669362 ~ 3669576 (+)
G138661 NA non-coding upstream 217543 3663776 ~ 3664008 (+)
G138744 NA non-coding downstream 129248 4036371 ~ 4039858 (+)
G138747 NA non-coding downstream 161664 4068787 ~ 4072088 (+)
G138758 NA non-coding downstream 197857 4104980 ~ 4114118 (+)
G138748 NA non-coding downstream 265648 4172771 ~ 4175585 (+)
G138840 NA non-coding downstream 329546 4236669 ~ 4237527 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 42179 3801853 ~ 3839372 (+)
G138701 NA other upstream 47091 3833255 ~ 3834460 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 762063 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 796686 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 945422 2900475 ~ 2936129 (+)
LOC111194271 NA other downstream 188874 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 258820 4165943 ~ 4172010 (+)
G138839 NA other downstream 330486 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 766257 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 796223 4703346 ~ 4708663 (+)

Expression


Co-expression Network