G138747


Basic Information

Item Value
gene id G138747
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4068787 ~ 4072088 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187781
AAAGGACGAGTAGCACTATCCTCTTTATTGTCAAATGAGCCAAACACTACATGGAACATTTAGTTTAAAGACCCACTTTTGAAGAGgacttcacacacacagaaaaagtacttaaaacaatatacaattaatttaatacattcaacaaaaaaaagtgcctTTCATTTTACTGACAAGGGAAGCGTGAACCAAGTTAAACTGCACACATATGTTAGCATAACATAATTGGCAGACTTGATGCAGCACTTGTATCTTTTAGTCCATAAGTAGGTTACTAAACGGTGAAGAACATCTAACACGTACATCTTAAACATACTAGGGAGAAAATACCTGATAAAGAATACATTTAAAGAATCCATGTTCTGTAAACTCCACTACCAGCGGAGACCGATAAGGAGTCTACGACCGTCCACGCAGAAAAGTCACGTCACGTATCAAATCGAATTCGCAAGTCTGATCCACAGCCAGCATTGAGGAGGACCGACTTATTCTTCCAATAAAATAAGCGCAAATGCAAGTGATTATTCAATAGCTATCCCTGCATTAAAATCTCCAGAGTTTAAATCAGGTCAGCGACATTCATGGGCATCTCCTCAACGGTCGTGTTGTAAAAGGTCTCAATATCTCGAAGAATCCTCTTGTCCTCCTCAGTAACGAAGTTGATGGCAACGCCTTTTCTGCCAAAGCGTCCACCACGGCCAATCCTGGAGAGAAACCAGTGTTAGCAATCCAGCTCATTATTGAATTTAGAGAGGGGGGAAAAATAAACCATCTACAGACTTTAACTCACCTATGGATATAGTTCTCACGGTTTGTCGGAAGGTCATAATTGATGACCAGCGAAACCTGTTGCACATCAATGCCACGagCAACAAATCTGTAGTAATCAGCACTCTGCTGGAGCCAGATCTAAACTCCCTCATAATGATGTCTCGCTCTTTCTGGTCCATGTCTCCatgctgcaaaaaaataataatgcacttaaaATTTAGAGTAGTCCTAATCATGCAAACAAAATGTATATCAAATTCACGCTAATACTTAAGGTCAGAGGTATGATCAGTAAATTAGGATTGTCTCCATTAAGTGTCAGTCCCGAAAGATGGTACCATCATTTCATACATAACCAAACAGGCAGAAtatttttctccctttttaaatgaaaagttAGCACTGTTCTCTTACCAATGCAGACACAGTGAAGTCTCTTGCATGCATCTTCTCAGTCAGCCAGTCCACCTTTCTTCTAGTGTTTAAGAAAATGACTGCCTGCGTGATTGTCAGGGTCTCATAGAGGTCACAAAGTGTGTCCAATTTCCATTCctgcagacagagacagaagtTATCGGACGGTGCATCAAAAACTCTCTGGTCTCTAGACCAAAGCTCTTTTGATGTGGTTGTAGCACAGAATCTTGAGACATAGGACACTGGACATTAGGAAAGAGGTCCCTCCTACACTCATTTGCGAAGCTGTGTCTTTATTCTTCCTTCTTTATCACAAACCATACTAGCATTATCGCCAGAGCTAAGCTTAAAAAGCTTAGGCCTGATGATTTTGGCATGGTGCTTTTAAAAAGAAGGGAATTTTTAGAGCAAGGTCAACAAGGTCAAACTGTCCTCACCTCTCGCTCCAcattaatgtagaattgcttgaTACCCTCCAGGGTAAGCTCTTCTTTCTTCACTAGGATGCGGACAGGTTCCCGCATGAACTTTGTGGTCACATCCAACACCTCTGCTGGCATAGTGGCCGAAAGCAGCACAACCTGCAGAGAATCACACAGTGCTCATTATGCCACTCATTAGGTTTCCTTCCAGTTTTTTAACAGATCTTACTCTTTAGAATAACTGTTGCACTAAACCTTGAAACAGGGGCCACTGGACATTAAGAAAGAGGTCCGACCACATTTCATTTCCGGTGTAGGGCACTTGCTCTTCTTCCATGTTTTTACTCTGCTAGCATTATCACACGAACCAGGAGAACCTAGATCCTGTAATTTCAGCACAGTTCTTTTGTATGGAAGAAAATCATAAGATCTGATTTACTGAACTCACCTGAATGTTTGTGCTTAATTTCTGGAAAATTTCATAAATCTGATCTTTAAATCCACGACTCAGCATTTCATCTGCTTCATCCAGGACAAACATCTTAATCCACTTAGGAGctacagaaagtgagaaatgttGCAGTTGGTTAACTGTTAATACTAAAGTGCAATCTGCATTATACATACTATGATGGAAATAAGCATGATCAGCAAAATAGTTAAAAAGATATCTCCATGACTTGTCAGTCCCGAAAGATGGTAAACCATCATTTCACACTTAATCCAACACAGAAACCTGTTGAACAGCTGTTTTAGATTCAGACACTTACAAAGGAACCTCCTGTTCAGCATGTCAAACACACGGCCTGGAGTCCCCACAACAATGTGCGGGGCTTCTGCTTGGAGTTTCTGCATTTCATTGCGGACATTGGTTCCTCCAATGCAGGCGTGACATGAGGCGCCCATGTAGTCACCCAGGGCCAAGATGACCTTCTGAATctacaaaaacaagaaataaaataaaagaatgtcACTTAAAAGAAACTgcttcacacacttacactgaaACTGAACTTCTGCTCCCTGCTAAACACCAAACAAGGAAATATTCTGAAACAAAGTCCATATTTCACCATTTACATAGCAGGAAGAAGATTCAAACTGTACCTTTGTTTCAGTTACTGCCCAAATATGCCGCCttggtctgagacacacttaaGTTTATCATGACCTCGGGTACAGCATACCTGCTGAGCGAGCTCTCGGGTTGGTGCCAGGACCAGAGCCTGAGTCTCTTTCTGCTCAATCTCCAATTGCTGCAGGATGGAGATGGCAAACGTGGCCGTTTTGCCAGTTCCTGACTGGGCTTGGGCAATGACATCGTAGcctgaaaaatataatacaacatTCAAGAAACTACAACACAAGTGTGCATTAAATACCAGTTGCCATCCCTTCCCCAATCAGCTTCCCAGAATCACCTTTTATGCAAGGAATAATTGCTCTTTGCTGAATAGCTGACGGCTTCTCGAAACCATATGCATAAATCCCACGGAGAAGAGTCTCCTTCAGGTTCATATCATCAAAATTGTCTGTAATCTCATTCCAGTTGCTCTGCAAGGCAGAAGAATCCGAGTTAAACCCAGTTGAATGAGTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187781 True 3209 lncRNA 0.41 2 4068787 4072088

Neighbor

gene id symbol gene type direction distance location
LOC103033521 b3gnt5 coding upstream 3313 4052730 ~ 4065474 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding upstream 22148 4022436 ~ 4046639 (+)
LOC103021527 NA coding upstream 65871 3995942 ~ 4002916 (+)
LOC103031935 ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460 coding upstream 126307 3901154 ~ 3942480 (+)
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding upstream 470185 3585149 ~ 3598602 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding downstream 3400 4075488 ~ 4080104 (+)
ccdc39 NA coding downstream 8924 4081012 ~ 4095442 (+)
LOC103022774 NA coding downstream 70008 4142096 ~ 4154519 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding downstream 235560 4307648 ~ 4326399 (+)
extl2 extl2 coding downstream 266995 4339083 ~ 4344329 (+)
G138744 NA non-coding upstream 28929 4036371 ~ 4039858 (+)
G138731 NA non-coding upstream 161664 3881551 ~ 3907123 (+)
G138671 NA non-coding upstream 315377 3720938 ~ 3753410 (+)
G138672 LOC105889432,LOC108437525,LOC108268022,LOC107722302,LOC107565821 non-coding upstream 335327 3732030 ~ 3733460 (+)
G138665 NA non-coding upstream 386857 3681726 ~ 3681930 (+)
G138758 NA non-coding downstream 32892 4104980 ~ 4114118 (+)
G138748 NA non-coding downstream 100683 4172771 ~ 4175585 (+)
G138840 NA non-coding downstream 164581 4236669 ~ 4237527 (+)
G138863 NA non-coding downstream 279293 4351381 ~ 4353535 (+)
G138865 NA non-coding downstream 282754 4354842 ~ 4355190 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 229415 3801853 ~ 3839372 (+)
G138701 NA other upstream 234327 3833255 ~ 3834460 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 949299 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 983922 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 1132658 2900475 ~ 2936129 (+)
LOC111194271 NA other downstream 23909 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 93855 4165943 ~ 4172010 (+)
G138839 NA other downstream 165521 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 601292 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 631258 4703346 ~ 4708663 (+)

Expression


Co-expression Network