G138748


Basic Information

Item Value
gene id G138748
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4172771 ~ 4175585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187782
tattgtatacgatataatattgcccacccctagtatatagtatatagtagtgagtagtgaaatttcactactggacttgttgctgcactggtgctgcatcctatcacacaGTACCAcatctttcactaatgtttgtggaAGCAGTCCCAGCATGCCTGCTTGCTTTTATTTATGCATCTGTGTTCATGGAAGTGATTGATGaacaaatacttttggcaatacatTGTCTAGTGTAACAGTCACAAcatacagacaataaaaaaataatacttttgtttgtttatgtttgtaGCCTAAAAATCGAATTCTGGATCTCGTAGTCTATTATATTTTAGTGTAGTTGATTCTGGTGTTCTGAAATCAGTGTCagaataaattaatgtatttttcgcactataaattGCACTGAATCATAATgcgcattatttttaaagtcaattgagtgctggatgtaaatctacaccgatttctctcctgaaaactgtttgtttgggtgagtaaagcgcttctgtttatttacagtaagcttagatttgcagattttcagtaaggcgatattagctagcggtttgtcccacgtagcttcttttaacacagtaaacacgcagactacagtctgatatactcgtcTCTGAGTGGTGAAAGggctagcacggttagtgggtaatgctaatgctgctccagcagtgctagccggggttagcagcaggccacagtccgatatactcgcctctgaacagcgtAAGAGTTAGTGCGTTTAGCGGGTAacgttaatgctgctccagcagtgctagccggggttagcagcaggcaacagtccgatatactcgcctctgaacagcgtAAGAGTTAGTGCGTTTAGCGGGTAacgttaatgctgctccagcagtgctagccggggttagcagctgacaacagtccgatatactcacctctaaatggtaaAAGagttagcgcggttagcgggtaatgctaatgctgctccagcagtgctagctgggattagcagcaagctacagtccgatatactcgcctctgaacagcgtAAGagttagtgcggttagcgggtaatgttaatgctgctccagcagtgctagccggggttagcagcaggcaacagtccaatatactcgcctctgagcggtgaaagagctagcgtggttagcgggttattctaatgctgctccagcagtgctagccggggttagcagcaggctacagtcccaCCAACTTGCCTCTGACTGGCATAAGAGATAGCACTTAATGCTAGTGCggttaacagctaatgctagACCTAAACTATAACGCTCTACTGCagaagagtggctttactgcttctcacaacctgactggtaaaattcaaacaaaagtgttccttatagtgcaaaaaatacagtacattaaaatcatttaatccATACATGATGAATAGATGCTGCCAAAACTGGCCTTCAAAACATCACGGATTGCATAAGCGACACACATGGTTTCTGTTCAGTTTGATCACATGttagcagacacacacatatccacACATGCACTGAAATTCCTGGGCAAGCTATACGACAAATACCAGatgatttatgtttgagttaatgtgtaaatagtgtttattctaatttagaatttttattttgtatttttgcatgcATGCTTTGCATAGTGTCTTCTCTGCTTCAGGGCACCAAAGCTGTACgccagctgtattattaattcTTCTGTGAAATCTCTGCGAGAGTTTCTGTAGATACTAGGGCTGCaagatatattgtttaagcatcatTATCatgatgtgcgcatgcgcaatagtcacatcgcaggacgcgcaacgtcacttaaggcaattaaatcgaacatgtcatgttgcaatgttttgattcttgatacaggaagtagatacacagtgctgtcactgtgtctgtgtgagtgacaagctgctgctgtctgagaaGCACGAGAAGGGGAGTGAAAGCACGAGGAGGGGGTGGTGGTTgtggggcaggagtaaacacgaggtaaccgcagcatggcctccatccacatggttgggcacgtgttTGTAAATGTAAGCACgcgtggaaagctgtgcacttcagtccagcacagttttgcagtgcagatatttccagttacagctgaattcatgcttttaatcccagaaaaacaaacgttcttatttaccttttaaaaagccatttaaaagcctgattaaagggcagattattgttgttttgctgttttactcgggttttcagtttagctcagcgctgactcagctcttgattggtctaGACGCGAGACAGCGtgtgggtgggggcggggctggtgatgtcatggaccctgcattgtttaatatcgccatatgtattgttaaaaaaagaacaattgcaatgtatttttttttttcaatattgtgcAGCGCTAGTAGATACTTTTCCACTTTTgctatgaggatttgattgcattcagcgacAAGAGCCTTTGTTAGATTTAGGGTGCTGGAAAAGCACCCCCCCCACATCATCTTCAACTCccctatatttttcttttcaaatacAGAGAAAATGCACAGTCTTCACCACAGTTTAGCACTAATCCCTGTCCCTCTGTTTTTTGTATTGACTCGAGGCAGTTAATTCCTTCAGAAATATTAAAGATTACAGAAGACAGGAGGATCCTGAGAAATGCCTTACAGCCGTGAAGTGCCAGCCCCTGCTATAATAATCATAGCCAGGTTATGTTGACTAAACCTGAGCGTAATGAACACTGTCTACTATGTCTAATTCTCgagtaatttcatttttttaataaacgc

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187782 True 2815 lncRNA 0.42 1 4172771 4175585

Neighbor

gene id symbol gene type direction distance location
LOC103022774 NA coding upstream 18252 4142096 ~ 4154519 (+)
ccdc39 NA coding upstream 77329 4081012 ~ 4095442 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding upstream 92667 4075488 ~ 4080104 (+)
LOC103033521 b3gnt5 coding upstream 107297 4052730 ~ 4065474 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding upstream 126132 4022436 ~ 4046639 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding downstream 132063 4307648 ~ 4326399 (+)
extl2 extl2 coding downstream 163498 4339083 ~ 4344329 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding downstream 210033 4385618 ~ 4393644 (+)
LOC103026534 LOC108428888,LOC108268317 coding downstream 469416 4645001 ~ 4658142 (+)
LOC103038785 NA coding downstream 538530 4714115 ~ 4719644 (+)
G138758 NA non-coding upstream 58653 4104980 ~ 4114118 (+)
G138747 NA non-coding upstream 100683 4068787 ~ 4072088 (+)
G138744 NA non-coding upstream 132913 4036371 ~ 4039858 (+)
G138731 NA non-coding upstream 265648 3881551 ~ 3907123 (+)
G138671 NA non-coding upstream 419361 3720938 ~ 3753410 (+)
G138840 NA non-coding downstream 61084 4236669 ~ 4237527 (+)
G138863 NA non-coding downstream 175796 4351381 ~ 4353535 (+)
G138865 NA non-coding downstream 179257 4354842 ~ 4355190 (+)
G138866 NA non-coding downstream 180302 4355887 ~ 4356137 (+)
G138867 NA non-coding downstream 182312 4357897 ~ 4358171 (+)
LOC103023077 NA other upstream 761 4165943 ~ 4172010 (+)
LOC111194271 NA other upstream 70530 4095997 ~ 4102241 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 333399 3801853 ~ 3839372 (+)
G138701 NA other upstream 338311 3833255 ~ 3834460 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 1053283 3115420 ~ 3119488 (+)
G138839 NA other downstream 62024 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 497795 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 527761 4703346 ~ 4708663 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 714288 4889873 ~ 5007006 (+)
G139154 NA other downstream 1279895 5455480 ~ 5456004 (+)

Expression


Co-expression Network