LOC103023077


Basic Information

Item Value
gene id LOC103023077
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4165943 ~ 4172010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187783
TGTGCTTCACtcccatctctctcactctgcttACCTTTACCTCACTCCTCATTCCTCACTCCTCACTCTCGGGCAGCATGGCGGGGAGGTACGGGCTCAGTCTGGGGTTCTGTTTGGTTCTGTTGGTTCTTCATTCCGCCGCAGAAACGCACAAAAAACACGAAAACGACGCGGCTCACCATCACTCTGCCCCCTCCGGAGCTACAGCAGGAGCACGGAATCAGGACAAACCGAAGCGCCTCTTCGCCAGGACGCGCTACCTGCCCACAAAGCAGCTCCACGTGCAGAGACCCAAGCCTGAGACTGTGGGTGCGGCACCCGTGCCGGTGCGCCGCTGTGCCGGCCTGATGGAGAGCTGCTCTGGACACGTTCCATGCTGTGATTCCTGCGCCTCCTGCCACTGTAGACTGTTTAACACCATCTGCCACTGCTGGAGGCTGGGAAACTGCACCAAAAAGACTTAACACCTTTCTGAAGCTACAGATTCTGAAGACGGGGGTGGAAACCTCAGAACAATTAActcttattacatttattacaactATTACAATTACAGCTATTATTGATTCAAATGACTTTgctacaattatttaaaaaaaaaagaatattattataattattaaaga
>XM_022677666.1
ATGGAGATGGAGCAGGGGTTGGTTGGGGGTGGGCGTTGCTTGCTCTACAGAGCTCTATAAGTATTAAGGAGTGAGCTGAAGTGCTCTGAAAGTGTGCTCTGTGCTTCACtcccatctctctcactctgcttACCTTTACCTCACTCCTCATTCCTCACTCCTCACTCTCGGGCAGCATGGCGGGGAGGTACGGGCTCAGTCTGGGGTTCTGTTTGGTTCTGTTGGTTCTTCATTCCGCCGCAGAAACGCACAAAAAACACGAAAACGACGCGGCTCACCATCACTCTGCCCCCTCCGGAGCTACAGCAGGAGCACGGAATCAGGACAAACCGAAGCGCCTCTTCGCCAGGACGCGCTACCTGCCCACAAAGCAGCTCCACGTGCAGAGACCCAAGCCTGAGACTGTGGGTGCGGCACCCGTGCCGGTGCGCCGCTGTGCCGGCCTGATGGAGAGCTGCTCTGGACACGTTCCATGCTGTGATTCCTGCGCCTCCTGCCACTGTAGACTGTTTAACACCATCTGCCACTGCTGGAGGCTGGGAAACTGCACCAAAAAGACTTAACACCTTTCTGAAGCTACAGATTCTGAAGACGGGGGTGGAAACCTCAGAACAATTAActcttattacatttattacaactATTACAATTACAGCTATTATTGATTCAAATGACTTTgctacaattatttaaaaaaaaaagaatattattataattattaaagaaAGATATTCActacattgccaaaagtatct
>XM_022677667.1
TAAGGAGTGAGCTGAAGTGCTCTGAAAGTGTGCTCTGTGCTTCACtcccatctctctcactctgcttACCTTTACCTCACTCCTCATTCCTCACTCCTCACTCTCGGGCAGCATGGCGGGGAGGTACGGGCTCAGTCTGGGGTTCTGTTTGGTTCTGTTGGTTCTTCATTCCGCCGCAGAAACGCACAAAAAACACGAAAACGACGCGGCTCACCATCACTCTGCCCCCTCCGGAGCTACAGGAGCACGGAATCAGGACAAACCGAAGCGCCTCTTCGCCAGGACGCGCTACCTGCCCACAAAGCAGCTCCACGTGCAGAGACCCAAGCCTGAGACTGTGGGTGCGGCACCCGTGCCGGTGCGCCGCTGTGCCGGCCTGATGGAGAGCTGCTCTGGACACGTTCCATGCTGTGATTCCTGCGCCTCCTGCCACTGTAGACTGTTTAACACCATCTGCCACTGCTGGAGGCTGGGAAACTGCACCAAAAAGACTTAACACCTTTCTGAAGCTACAGATTCTGAAGACGGGGGTGGAAACCTCAGAACAATTAActcttattacatttattacaactATTACAATTACAGCTATTATTGATTCAAATGACTTTgctacaattatttaaaaaaaaaagaatattattataattattaaagaaAGATATTCActacattgccaaaagtatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187783 False 626 TUCP 0.50 3 4166042 4171980
XM_022677666.1 True 755 mRNA 0.49 3 4165943 4172010
XM_022677667.1 False 688 mRNA 0.49 3 4166007 4172010

Neighbor

gene id symbol gene type direction distance location
LOC103022774 NA coding upstream 11424 4142096 ~ 4154519 (+)
ccdc39 NA coding upstream 70501 4081012 ~ 4095442 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding upstream 85839 4075488 ~ 4080104 (+)
LOC103033521 b3gnt5 coding upstream 100469 4052730 ~ 4065474 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding upstream 119304 4022436 ~ 4046639 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding downstream 135638 4307648 ~ 4326399 (+)
extl2 extl2 coding downstream 167073 4339083 ~ 4344329 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding downstream 213608 4385618 ~ 4393644 (+)
LOC103026534 LOC108428888,LOC108268317 coding downstream 472991 4645001 ~ 4658142 (+)
LOC103038785 NA coding downstream 542105 4714115 ~ 4719644 (+)
G138758 NA non-coding upstream 51825 4104980 ~ 4114118 (+)
G138747 NA non-coding upstream 93855 4068787 ~ 4072088 (+)
G138744 NA non-coding upstream 126085 4036371 ~ 4039858 (+)
G138731 NA non-coding upstream 258820 3881551 ~ 3907123 (+)
G138671 NA non-coding upstream 412533 3720938 ~ 3753410 (+)
G138748 NA non-coding downstream 761 4172771 ~ 4175585 (+)
G138840 NA non-coding downstream 64659 4236669 ~ 4237527 (+)
G138863 NA non-coding downstream 179371 4351381 ~ 4353535 (+)
G138865 NA non-coding downstream 182832 4354842 ~ 4355190 (+)
G138866 NA non-coding downstream 183877 4355887 ~ 4356137 (+)
LOC111194271 NA other upstream 63702 4095997 ~ 4102241 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 326571 3801853 ~ 3839372 (+)
G138701 NA other upstream 331483 3833255 ~ 3834460 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 1046455 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 1081078 3082056 ~ 3084865 (+)
G138839 NA other downstream 65599 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 501370 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 531336 4703346 ~ 4708663 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 717863 4889873 ~ 5007006 (+)
G139154 NA other downstream 1283470 5455480 ~ 5456004 (+)

Expression


Co-expression Network