G138866


Basic Information

Item Value
gene id G138866
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4355887 ~ 4356137 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187981
ACCTTTAACAGTTACACTGACTCTGGACCTCCGGCTGGCCAGTTCAGCGCTTGCCTCACACTCATACACGCCTGCATGAGCCGAGGTAGCTTTTTCAATCACATGCACTCTGTTTGTGGTTATTGGGATTGCCTCACTCTTCTCTAACTTCCTCCATGTAATGCTGGACTTCCCATCAGCATCACATTTCAGCTCCAGACGTTCTCCGATCTTCACAGTAGTGTTACTGGAGGTGGTCAAGAATGCCGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187981 True 251 lncRNA 0.50 1 4355887 4356137

Neighbor

gene id symbol gene type direction distance location
extl2 extl2 coding upstream 11558 4339083 ~ 4344329 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding upstream 29488 4307648 ~ 4326399 (+)
LOC103022774 NA coding upstream 201368 4142096 ~ 4154519 (+)
ccdc39 NA coding upstream 260445 4081012 ~ 4095442 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding upstream 275783 4075488 ~ 4080104 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding downstream 29481 4385618 ~ 4393644 (+)
LOC103026534 LOC108428888,LOC108268317 coding downstream 288864 4645001 ~ 4658142 (+)
LOC103038785 NA coding downstream 357978 4714115 ~ 4719644 (+)
blvra blvra coding downstream 372330 4728467 ~ 4733915 (+)
LOC103039605 NA coding downstream 401705 4757842 ~ 4761690 (+)
G138865 NA non-coding upstream 697 4354842 ~ 4355190 (+)
G138863 NA non-coding upstream 2352 4351381 ~ 4353535 (+)
G138840 NA non-coding upstream 118360 4236669 ~ 4237527 (+)
G138748 NA non-coding upstream 180302 4172771 ~ 4175585 (+)
G138758 NA non-coding upstream 241769 4104980 ~ 4114118 (+)
G138867 NA non-coding downstream 1760 4357897 ~ 4358171 (+)
G138868 NA non-coding downstream 3025 4359162 ~ 4359420 (+)
G138869 NA non-coding downstream 5942 4362079 ~ 4362735 (+)
G138858 NA non-coding downstream 39943 4396080 ~ 4396951 (+)
G138859 NA non-coding downstream 41090 4397227 ~ 4398605 (+)
G138839 NA other upstream 110023 4237609 ~ 4245864 (+)
LOC103023077 NA other upstream 183877 4165943 ~ 4172010 (+)
LOC111194271 NA other upstream 253646 4095997 ~ 4102241 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 516515 3801853 ~ 3839372 (+)
LOC103026815 LOC108428843 other downstream 317243 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 347209 4703346 ~ 4708663 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 533736 4889873 ~ 5007006 (+)
G139154 NA other downstream 1099343 5455480 ~ 5456004 (+)
LOC107197321 NA other downstream 1703280 6059417 ~ 6060050 (+)

Expression


Co-expression Network