G138941


Basic Information

Item Value
gene id G138941
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4657060 ~ 4657384 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188090
ATaaaatagagattctgattggtttattctCTAAAGTTCACTCTTTGTTGTCCCACGCCTAGTGGAAACAGatattctgattggttcattcTCTAAAATTGACTCTCTGTTGTCCCACTCCCCTGGAAataaagattctgattggtttattctCTAAAGTTGTCTCTCTGTTGTCCCACCCCCAGTGGAAATAGatattctgattggttcattcTCTAAAATGTTGTTCTATCCACATATaaaatagagattctgattggttc

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
TU188090 True 263 lncRNA 0.36 2 4657060 4657384

Neighbor

gene id symbol gene type direction distance location
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding upstream 263416 4385618 ~ 4393644 (+)
extl2 extl2 coding upstream 312731 4339083 ~ 4344329 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding upstream 330661 4307648 ~ 4326399 (+)
LOC103022774 NA coding upstream 502541 4142096 ~ 4154519 (+)
ccdc39 NA coding upstream 561618 4081012 ~ 4095442 (+)
LOC103038785 NA coding downstream 56731 4714115 ~ 4719644 (+)
blvra blvra coding downstream 71083 4728467 ~ 4733915 (+)
LOC103039605 NA coding downstream 100458 4757842 ~ 4761690 (+)
LOC103040234 keap1a,LOC108428896,LOC107749088,LOC107678690,LOC107721712,LOC108268010,LOC107690048 coding downstream 167246 4824630 ~ 4854002 (+)
znf622 znf622,LOC107721690 coding downstream 350752 5008136 ~ 5016931 (+)
G138925 NA non-coding upstream 130289 4526570 ~ 4526771 (+)
G138922 NA non-coding upstream 144254 4512596 ~ 4512806 (+)
G138859 NA non-coding upstream 258455 4397227 ~ 4398605 (+)
G138858 NA non-coding upstream 260109 4396080 ~ 4396951 (+)
G138869 NA non-coding upstream 294325 4362079 ~ 4362735 (+)
G138944 NA non-coding downstream 78252 4735636 ~ 4737366 (+)
G138945 NA non-coding downstream 80507 4737891 ~ 4738436 (+)
G138969 NA non-coding downstream 133116 4790500 ~ 4790958 (+)
G138976 NA non-coding downstream 245489 4902873 ~ 4903590 (+)
G138977 NA non-coding downstream 250361 4907745 ~ 4936889 (+)
G138839 NA other upstream 411196 4237609 ~ 4245864 (+)
LOC103023077 NA other upstream 485050 4165943 ~ 4172010 (+)
LOC111194271 NA other upstream 554819 4095997 ~ 4102241 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 817688 3801853 ~ 3839372 (+)
LOC103026815 LOC108428843 other downstream 15996 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 45962 4703346 ~ 4708663 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 232489 4889873 ~ 5007006 (+)
G139154 NA other downstream 798096 5455480 ~ 5456004 (+)
LOC107197321 NA other downstream 1402033 6059417 ~ 6060050 (+)

Expression


Co-expression Network