G40919


Basic Information

Item Value
gene id G40919
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 904785 ~ 906069 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU46456
AGGCAGGCAGACTAGCTTGCTGAACAGTGAACGCCATTTTGACCAGGCTAGGACACCAGCAAAGACCAGTCAAAAAGCTGATTTGATGTTTGAATGATTTTTCAACATCTGGTCCATCTTGTCAGAACTTTTCAAGTCAACTTGCTTTAAATTTCCATTGCATTGCAATGTGTACAGAGTTAACTGTCCAAGCACATTAATCCTGTGTAAAGTTGCATTCACATTTGTGAAATTTTGTGGGCAAAAAGGTTAATTGTCCTTTATCATTTTGTGTGGCCAACTTGAAACTGATGCAAAATCTGTGTGGGAAAATCTTTCACTCTCACAAAAAATTCCTGATTGCATGGATTCATATAGAAATGACTGGATTTAATTGACAAAAATTGACTGGACAATGATAAAGATGTGGTCACATTAACAAAATCTCAGCAAAATTTCACTGGCAAAAAAGGTCCACTCCATATTGTGTATATAGTGTAATTACGTATGAAGCACAGCTCAGACAGAAGTCACTTTGCCCGTGAAAATTTGCTGAACAACAGTAAATGTGACCGCGCAATAACTCTGTATTTTATGAACCTTTTGTTGAAAAATCACAGCCCTTTGGTATCATTCATGTGTTCAAAAGTATTTATATCCTTCTAAATGGAGAGGCCCTAAATGTAAATCAGCTAGATGAAGCAAACTGGAATGTAAACCACTTCTTGAGCAAGATGCTAAATAAACAGCGAGATCCATTGCAGCAGTCAAATATGTCGCAATGTTTACAACACAGATGGACACAAGTGTGAGTGGCCCCTTAAAAGGTTGCTAAGGATGTTTGTTTTTTGTTTTGTTTTTTTTTACCTCATCTTATGACATTTTGGGTGAAAACATTGATTCTGTAACCACATGACTGTTTCTTTCCAAAACTTGTCCATCTAGCTTCTCTCTAAATAAACGCACAGATCTAAATCCCTTCGTAAATGTTGTAAATATGAACTAGAATTTTATTTTTGTATTTATTGAAGTATCTGTGCTTTTTCCCAGAGCCGTTGTGTTTATCAGACCACTTTGCGCTTTTTTGTGCATGCGGCATGAGTGACAATCCTACACGTATCCAAGAGCCAATATGATATATCCTCCACATTGTCCGAGCACTGTATTGAGAAATTCAGTGTGAGAATTTTAAGAATGCAGCAGACGTCACATCTGCATTCTTCATTTATTACTGTCTACTTGATTCAAGGGGTATGGCATCAACATTCTTAATTCATCACATTCTTGACTTAATAAAGCTACCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46456 True 1285 lncRNA 0.37 1 904785 906069

Neighbor

gene id symbol gene type direction distance location
CI01000006_00812192_00902946 ADAMTS2 coding upstream 1681 812192 ~ 903104 (+)
CI01000006_00800935_00809574 NA coding upstream 94503 799319 ~ 810282 (+)
CI01000006_00766356_00790875 CNOT6, CNOT6A coding upstream 113630 765966 ~ 791155 (+)
CI01000006_00674724_00686031 NA coding upstream 218279 673855 ~ 686506 (+)
CI01000006_00666971_00667988 NA coding upstream 236396 666793 ~ 668405 (+)
CI01000006_00926597_00930448 KIAA1191 coding downstream 20216 926285 ~ 931201 (+)
CI01000006_00946696_00969588 GFPT2 coding downstream 40627 946696 ~ 971158 (+)
CI01000006_00993313_01003875 MAPK9 coding downstream 86935 993004 ~ 1004140 (+)
CI01000006_01006114_01006327 NA coding downstream 100045 1006114 ~ 1006594 (+)
CI01000006_01032572_01040625 CLK4B coding downstream 126503 1032572 ~ 1041142 (+)
G40925 NA non-coding upstream 118457 723821 ~ 786328 (+)
G40935 NA non-coding upstream 189135 714904 ~ 715650 (+)
G40904 NA non-coding upstream 274353 626733 ~ 630432 (+)
G40852 NA non-coding upstream 353429 529128 ~ 551356 (+)
G41013 NA non-coding downstream 68107 974176 ~ 974468 (+)
G41008 NA non-coding downstream 72754 978823 ~ 1008004 (+)
G40987 NA non-coding downstream 117317 1023386 ~ 1027790 (+)
G40998 NA non-coding downstream 122639 1028708 ~ 1031192 (+)
G41028 NA non-coding downstream 277996 1184065 ~ 1185743 (+)
G40768 NA other upstream 411759 488407 ~ 493026 (+)
G40767 NA other upstream 421450 360009 ~ 484185 (+)
G40772 NA other upstream 425591 475465 ~ 479194 (+)
G41170 NA other downstream 785996 1692065 ~ 1695821 (+)
G41424 NA other downstream 1739593 2645662 ~ 2660570 (+)
G41591 NA other downstream 1930098 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 2823161 3734554 ~ 3736035 (+)
G41996 NA other downstream 4211137 5117206 ~ 5124149 (+)

Expression


Co-expression Network