LOC103026815 (LOC108428843)


Basic Information

Item Value
gene id LOC103026815
gene name LOC108428843
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4673380 ~ 4722774 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188092
ACCCTGGCAGAGCGGGCTGCAGCCAGATGCTGAGGACCATAGTGGCGGAGATGGCCATAAAGGTAGATTGTGTTGCTTTTCCAAGGACCCCCTTGAAGATGCCGCATGTTGGAGCGATTCGATCGAAAGGCTGCTGGGCTGCAAAGCCGGTCAGCTGGCGTTCCAGGAGTTCCTGAGGTCTGAGTACAGCGAGGAGAACATCCTGTTCTGGCTGGCCTGCGAGGACTACAAGAAGATCAAGAACACGCCCGAGATGATCAGCGCAGCCAACCGCATCTACTCCGAGTACGTGCAGGTGGAGGCCCCCAGGCAGATTAACATCGACTGCGGAACCCGAGCCAACATCACAAAGAACATCCACGAGCCCAACTTGAACTCCTTCGACACGGCGCAGAAGCTGATCTTCAGCCTCATGGCGAGGGACTGCTACCCCCGGTTTTTAAAATCTGAAATCTACCAGTCTGTTCTACGGAAAGCAGGCAAGAGCTGACTTCTCTCGGTGAGAAGCCAACTCTTTCAGAGTGCGTTTTGTTCCCAGGTAAATGCGTCTCCGCATCAGGCCAAGATTGCTTTATCAAAAATAGTCTGTTTCAGCAGAGGGATGAAATGGAGCCCCGCTGGTGACCTGATTTCTTCATAAAATAATCACAACTAGATATATCTGTTggaaaatccagctcaagaccagctttAACCCCCAAATCTGATCTTGAGCTGAATTTTTTACAGGGCTATTGAAGGTTAAGCTGGTTTCAAATCACTGGTCCCCCACGTGAAAACATCCTAATGCTGGTAATGCCTAGTTCACACAATCTTAGCCCAATTTTCAACTTGTAGACAGTAGTTTTCCAACAAAACTCTTTGTGTGAACTGCTAAAAGACATTTGCTGAGCTTTTTCCAATGAATCACAGTCTCACCCAACaaatatctagcaggtttaatatctggaCCAGTCAGAGACTGTGAGTCAAAAGCAGAAACTATCAATAACCATTGGAATGGCACAGGGTCAACATGTCCAACCAACAAATCTTCTGCATGGCATTGCCTGGTCTTGCACGTGTTTAGTTCCAgtgacaaaatatgtttttggagAGCAACAGGATGTCGCCAATCAATCAATTTAGTCTTTTAGAAAAACTAAACTGGTATGAACCTGTATGATCAAGCTGGTTAAATTGGTTTGAGTAGTTTGACCAGGCTGGTCAACAATCCCTGTTATGATGCTTTATTATCTTTAGATATTTAGACATTCAGTGTATCATGACTGATATACAGTACCTAGTAGTACCTGCTAGtataccagctaaaccatcaaactcaaaccaTGTTGAGCAAAGATGGTAAACAAGCTAAACCAGCTTGAGCAGGCTATTATTTTTTAGCAGGGAATGAGGCCAATTGATTAAGAAGAGGTCACCAGTGGAGCTCCATACTCTTCATTACAGCTTACCATGGCTTATAAATCTGAAGTGAAGAGTTAACTGGAAGTTTCATCCTGAGAAATGATGTATAGTCCCccaaagaaaaaatcacactacAATAGTCACCCTAATTTAATCCAGACATGAGTGATACAGTATAAACTTTACAGTCTTAAGAGTATACAGTGACCCAGTGAGATATATGCAGTATATACATATCACATTTCACATGCATACACTTTAAGAATTGCAACACTcgtaatatatcatataaaaggaCAAGAAAGACAGTAAACTGGTACTTCTGCTCTTAATGGCCTTCAAAAATGTCTAAAACCCCCCAaattcatttcttaaaatccCGCTGTTGCCTGGTAACTAGCGCACTTCATAAAGAAACTGTTACTGCAAGTGTATTGCATATTCAGACTGGTGAGTATCACTTCATCTTATATTGTACAGAAACTCGCAGACTGTATTAGTTAGAACTACAGTACAGCTTTGTAGGAGAGTCTGAGGTGTGGTTATTTGTTAAGTATGaagatgtacttttttttattgctgtgcttttgtttgcattaaaatctagttttgtataaaatattatatacagctatatacacatttatatactaAACACACCCATACAAAAACACAAGTGGTGTCAAGAAAAAAAACGTCTAACATCTAATTTTCTATAAATATGAAGATCCTACGTCTCTCACATTTATCATAATTCTTTacaacaacttttattgttgattacagccaatgaaaacacaaaaatcagtgtctcagaaaatttgaatattatattttaggaCCAATTGGTacgtttggcagtgtgggcagtgtgccaaatcctgctggaaaatgaaatccacatctccactGATCtgatttttgggttttcattggctgtaagccataatca
>TU188094
ACCCTGGCAGAGCGGGCTGCAGCCAGATGCTGAGGACCATAGTGGCGGAGATGGCCATAAAGACCCCCTTGAAGATGCCGCATGTTGGAGCGATTCGATCGAAAGGCTGCTGGGCTGCAAAGCCGGTCAGCTGGCGTTCCAGGAGTTCCTGAGGTCTGAGTACAGCGAGGAGAACATCCTGTTCTGGCTGGCCTGCGAGGACTACAAGAAGATCAAGAACACGCCCGAGATGATCAGCGCAGCCAACCGCATCTACTCCGAGTACGTGCAGGTGGAGGCCCCCAGGCAGATTAACATCGACTGCGGAACCCGAGCCAACATCACAAAGAACATCCACGAGCCCAACTTGAACTCCTTCGACACGGCGCAGAAGCTGATCTTCAGCCTCATGGCGAGGGACTGCTACCCCCGGTTTTTAAAATCTGAAATCTACCAGTCTGTTCTACGGAAAGCAGGCAAGAGCTGACTTCTCTCGGTGAGAAGCCAACTCTTTCAGAGTGCGTTTTGTTCCCAGGTAAATGCGTCTCCGCATCAGGCCAAGATTGCTTTATCAAAAATAGTCTGTTTCAGCAGAGGGATGAAATGGAGCCCCGCTGGTGACCTGATTTCTTCATAAAATAATCACAACTAGATATATCTGTTggaaaatccagctcaagaccagctttAACCCCCAAATCTGATCTTGAGCTGAATTTTTTACAGGGCTATTGAAGGTTAAGCTGGTTTCAAATCACTGGTCCCCCACGTGAAAACATCCTAATGCTGGTAATGCCTAGTTCACACAATCTTAGCCCAATTTTCAACTTGTAGACAGTAGTTTTCCAACAAAACTCTTTGTGTGAACTGCTAAAAGACATTTGCTGAGCTTTTTCCAATGAATCACAGTCTCACCCAACaaatatctagcaggtttaatatctggaCCAGTCAGAGACTGTGAGTCAAAAGCAGAAACTATCAATAACCATTGGAATGGCACAGGGTCAACATGTCCAACCAACAAATCTTCTGCATGGCATTGCCTGGTCTTGCACGTGTTTAGTTCCAgtgacaaaatatgtttttggagAGCAACAGGATGTCGCCAATCAATCAATTTAGTCTTTTAGAAAAACTAAACTGGTATGAACCTGTATGATCAAGCTGGTTAAATTGGTTTGAGTAGTTTGACCAGGCTGGTCAACAATCCCTGTTATGATGCTTTATTATCTTTAGATATTTAGACATTCAGTGTATCATGACTGATATACAGTACCTAGTAGTACCTGCTAGtataccagctaaaccatcaaactcaaaccaTGTTGAGCAAAGATGGTAAACAAGCTAAACCAGCTTGAGCAGGCTATTATTTTTTAGCAGGGAATGAGGCCAATTGATTAAGAAGAGGTCACCAGTGGAGCTCCATACTCTTCATTACAGCTTACCATGGCTTATAAATCTGAAGTGAAGAGTTAACTGGAAGTTTCATCCTGAGAAATGATGTATAGTCCCccaaagaaaaaatcacactacAATAGTCACCCTAATTTAATCCAGACATGAGTGATACAGTATAAACTTTACAGTCTTAAGAGTATACAGTGACCCAGTGAGATATATGCAGTATATACATATCACATTTCACATGCATACACTTTAAGAATTGCAACACTcgtaatatatcatataaaaggaCAAGAAAGACAGTAAACTGGTACTTCTGCTCTTAATGGCCTTCAAAAATGTCTAAAACCCCCCAaattcatttcttaaaatccCGCTGTTGCCTGGTAACTAGCGCACTTCATAAAGAAACTGTTACTGCAAGTGTATTGCATATTCAGACTGGTGAGTATCACTTCATCTTATATTGTACAGAAACTCGCAGACTGTATTAGTTAGAACTACAGTACAGCTTTGTAGGAGAGTCTGAGGTGTGGTTATTTGTTAAGTATGaagatgtacttttttttattgctgtgcttttgtttgcattaaaatctagttttgtataaaatattatatacagctatatacacatttatatactaAACACACCCATACAAAAACACAAGTGGTGTCAAGAAAAAAAACGTCTAACATCTAATTTTCTATAAATATGAAGATCCTACGTCTCTCACATTTATCATAATTCTTTacaacaacttttattgttgattacagccaatgaaaacacaaaaatcagtgtctcagaaaatttgaatattatattttaggaCCAATTGGTacgtttggcagtgtgggcagtgtgccaaatcctgctggaaaatgaaatccacatctccactGATCCTCCACTCCTCTGATTTTTgcgttttaattggctgtaagctataatcatcaaccattaaataaataaaagcttaaaatagatcactctgtgtgtaatgcatctatataatatatgagtttcacattttgaactgaattactgaaataaatacaggaaaaatGATATTCTAACTTACATGAGAACAAACTCATTTTTATCAAATTTACTTTCAATGGATGTGTAATTTTTTATTCCAATACTTTACTGTGGACAATACAAAACTCTTTTACAAAACAATTTACAGCAGTGGTCAGAGaataaaagtctttttaatgttaaaacctATTTCTATAACTACAGtatgttaaaaagaaaaactacaaaaatggagatacctGGTTTGACCcgttctattggtccatttatcatgaaCTGTTAACAGACTGTAAAGAACAACTGGTACTTTCTGGAAATAcatgaaaaacaataatatcTTTTCACCAACAGCTAAGATATGTTTAAAGAGTCCATTACAAAATCAGTCCTGtttaaacctaaaaaaacatCTGTACAATTTACACATTGTAAAGAGTTGCAGTGTGGAACTGTTGTTGATATATTGTATCATTCTGTATCAACTATTGCAAAACtattcaaatcttttttttcttattattgttatttaattgtCTTAATAAAAGTTGATGCCATTTTGTATCAATGACATTTATTATTAGCAGTGCACCAAAAAATGCTTTATCAGCCGATCTGTTGAACAGGTTAGGCCTAAGCTTTCTTTCACGTGTGGATTCTGTTTAACTGTCCTTAAATTActtgtacaaataaaaaatctacattACAGAGCA
>XM_022677869.1
ATGTTGATTTCCATGTGTTCCATACATGGAGGTGAGCTAGTTAGACCCTCCGCAGTCCCACACCCTGGCAGAGCGGGCTGCAGCCAGATGCTGAGGACCATAGTGGCGGAGATGGCCATAAAATTGTGTTGCTTTTCCAAGGACCCCCTTGAAGATGCCGCATGTTGGAGCGATTCGATCGAAAGGCTGCTGGGCTGCAAAGCCGGTCAGCTGGCGTTCCAGGAGTTCCTGAGGTCTGAGTACAGCGAGGAGAACATCCTGTTCTGGCTGGCCTGCGAGGACTACAAGAAGATCAAGAACACGCCCGAGATGATCAGCGCAGCCAACCGCATCTACTCCGAGTACGTGCAGGTGGAGGCCCCCAGGCAGATTAACATCGACTGCGGAACCCGAGCCAACATCACAAAGAACATCCACGAGCCCAACTTGAACTCCTTCGACACGGCGCAGAAGCTGATCTTCAGCCTCATGGCGAGGGACTGCTACCCCCGGTTTTTAAAATCTGAAATCTACCAGTCTGTTCTACGGAAAGCAGGCAAGAGCTGACTTCTCTCGGTGAGAAGCCAACTCTTTCAGAGTGCGTTTTGTTCCCAGGTAAATGCGTCTCCGCATCAGGCCAAGATTGCTTTATCAAAAATAGTCTGTTTCAGCAGAGGGATGAAATGGAGCCCCGCTGGTGACCTGATTTCTTCATAAAATAATCACAACTAGATATATCTGTTggaaaatccagctcaagaccagctttAACCCCCAAATCTGATCTTGAGCTGAATTTTTTACAGGGCTATTGAAGGTTAAGCTGGTTTCAAATCACTGGTCCCCCACGTGAAAACATCCTAATGCTGGTAATGCCTAGTTCACACAATCTTAGCCCAATTTTCAACTTGTAGACAGTAGTTTTCCAACAAAACTCTTTGTGTGAACTGCTAAAAGACATTTGCTGAGCTTTTTCCAATGAATCACAGTCTCACCCAACaaatatctagcaggtttaatatctggaCCAGTCAGAGACTGTGAGTCAAAAGCAGAAACTATCAATAACCATTGGAATGGCACAGGGTCAACATGTCCAACCAACAAATCTTCTGCATGGCATTGCCTGGTCTTGCACGTGTTTAGTTCCAgtgacaaaatatgtttttggagAGCAACAGGATGTCGCCAATCAATCAATTTAGTCTTTTAGAAAAACTAAACTGGTATGAACCTGTATGATCAAGCTGGTTAAATTGGTTTGAGTAGTTTGACCAGGCTGGTCAACAATCCCTGTTATGATGCTTTATTATCTTTAGATATTTAGACATTCAGTGTATCATGACTGATATACAGTACCTAGTAGTACCTGCTAGtataccagctaaaccatcaaactcaaaccaTGTTGAGCAAAGATGGTAAACAAGCTAAACCAGCTTGAGCAGGCTATTATTTTTTAGCAGGGAATGAGGCCAATTGATTAAGAAGAGGTCACCAGTGGAGCTCCATACTCTTCATTACAGCTTACCATGGCTTATAAATCTGAAGTGAAGAGTTAACTGGAAGTTTCATCCTGAGAAATGATGTATAGTCCCccaaagaaaaaatcacactacAATAGTCACCCTAATTTAATCCAGACATGAGTGATACAGTATAAACTTTACAGTCTTAAGAGTATACAGTGACCCAGTGAGATATATGCAGTATATACATATCACATTTCACATGCATACACTTTAAGAATTGCAACACTcgtaatatatcatataaaaggaCAAGAAAGACAGTAAACTGGTACTTCTGCTCTTAATGGCCTTCAAAAATGTCTAAAACCCCCCAaattcatttcttaaaatccCGCTGTTGCCTGGTAACTAGCGCACTTCATAAAGAAACTGTTACTGCAAGTGTATTGCATATTCAGACTGGTGAGTATCACTTCATCTTATATTGTACAGAAACTCGCAGACTGTATTAGTTAGAACTACAGTACAGCTTTGTAGGAGAGTCTGAGGTGTGGTTATTTGTTAAGTATGaagatgtacttttttttattgctgtgcttttgtttgcattaaaatctagttttgtataaaatattatatacagctatatacacatttatatactaAACACACCCATACAAAAACACAAGTGGTGTCAAGAAAAAAAACGTCTAACATCTAATTTTCTATAAATATGAAGATCCTACGTCTCTCACATTTATCATAATTCTTTacaacaacttttattgttgattacagccaatgaaaacacaaaaatcagtgtctcagaaaatttgaatattatatttt

Function

NR:

description
PREDICTED: regulator of G-protein signaling 21-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188092 False 2359 lncRNA 0.41 5 4673442 4722774
TU188094 True 3144 lncRNA 0.38 5 4673442 4682725
XM_022677869.1 False 2300 mRNA 0.41 5 4673380 4681158

Neighbor

gene id symbol gene type direction distance location
LOC103026534 LOC108428888,LOC108268317 coding upstream 15238 4645001 ~ 4658142 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding upstream 279736 4385618 ~ 4393644 (+)
extl2 extl2 coding upstream 329051 4339083 ~ 4344329 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding upstream 346981 4307648 ~ 4326399 (+)
LOC103022774 NA coding upstream 518861 4142096 ~ 4154519 (+)
blvra blvra coding downstream 5693 4728467 ~ 4733915 (+)
LOC103039605 NA coding downstream 35068 4757842 ~ 4761690 (+)
LOC103040234 keap1a,LOC108428896,LOC107749088,LOC107678690,LOC107721712,LOC108268010,LOC107690048 coding downstream 101856 4824630 ~ 4854002 (+)
znf622 znf622,LOC107721690 coding downstream 285362 5008136 ~ 5016931 (+)
d2hgdh d2hgdh,LOC107749221,LOC107678686 coding downstream 295160 5017934 ~ 5026288 (+)
G138941 NA non-coding upstream 15996 4657060 ~ 4657384 (+)
G138925 NA non-coding upstream 146609 4526570 ~ 4526771 (+)
G138922 NA non-coding upstream 160574 4512596 ~ 4512806 (+)
G138859 NA non-coding upstream 274775 4397227 ~ 4398605 (+)
G138858 NA non-coding upstream 276429 4396080 ~ 4396951 (+)
G138944 NA non-coding downstream 12862 4735636 ~ 4737366 (+)
G138945 NA non-coding downstream 15117 4737891 ~ 4738436 (+)
G138969 NA non-coding downstream 67726 4790500 ~ 4790958 (+)
G138976 NA non-coding downstream 180099 4902873 ~ 4903590 (+)
G138977 NA non-coding downstream 184971 4907745 ~ 4936889 (+)
G138839 NA other upstream 427516 4237609 ~ 4245864 (+)
LOC103023077 NA other upstream 501370 4165943 ~ 4172010 (+)
LOC111194271 NA other upstream 571139 4095997 ~ 4102241 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 834008 3801853 ~ 3839372 (+)
G138701 NA other upstream 838920 3833255 ~ 3834460 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 167099 4889873 ~ 5007006 (+)
G139154 NA other downstream 732706 5455480 ~ 5456004 (+)
LOC107197321 NA other downstream 1336643 6059417 ~ 6060050 (+)
LOC103021569 NA other downstream 1423189 6145963 ~ 6155929 (+)
G139268 NA other downstream 1436946 6159720 ~ 6164164 (+)

Expression


Co-expression Network