G138944


Basic Information

Item Value
gene id G138944
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4735636 ~ 4737366 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188099
tgtgtttaatacatctatataatatattaattttgaaCTAAAATACCTTTTCAATGATGTTACATTTtgaagatgcactagtacaggTCAGGAACATCCCAGTTCCCATCCCAGTTTCCAGAACATCAACACACAGCAGCTGAGAACTAATAATCATAGTATTATCTTTAGTGTCAGTATTGTAACACCTTAAACATAAACTTTAATCATTTGTTGGATGAGTTGGACTGCGCTGATTTTGTGCcttattaatctaattaatctTTGCATGCTTATTCATCTGCTGATGCTTCTCCTCCCTCCAGATAGATCAGTTATGTGTAGGTTTGTGGGAACATTTCTTCCCCTATTTTAGGAAATGTATTTACTGCAGCTGTAGAAAGTTACAAGAGGAACTATCAGGTCACCAGGCCCAGTTGTAGGAACACAGTGAACACTAGGGGTGGGATAAAATATCGGTATTGTGTTATATCGTATCGTTTTCATTTGAGAAACATTACCGATGCATGGCATCATGTTTTTTAAGCTATTTGCTAATATTGCTAATAgagattattttgtttttctttctgtttctattGTTACATTTTCGTTACATTGTCATTCATATCTGTTGCTCTCCATATATAAAGAGTGCCCCTGAAATGGACTGAGTGTGTCTCACCCTGTGGTAAATGTCCTTATTGACTGTGCAGGAAATTTTAATCTCTGTTTTGATAGTCTAAACAGCATGAAATcacatgaaatctgatttttggtgttttataGGTTAAATCCAGATCGGTTTTGATAGTCTGAACAGCATGGAACCACATAAAATCTGATGTTTGGAACGACTAGACTGTATtcagattgatttttgatagtgTGAACAACTTGAAACCACATGgaatctgagtttttttttttttttttttttaaatgggttGTATCCATATTGAGTTCTGATAATCTGAGCTTGAAACCACATGAAATCTGATTTCTGGAATATtgagattgtatccagatttatGAGCTATGATAGTTTGTACAGCCCAAAATCACATGAAATTAGTATTAGATATTTTGTGGTTTATGGGTTATAGCCAGACTGGTTTTGATAGTCTGAACAGCCTGAAGCCACATAAAATCGGATTTTTGGAATGACTAGACTGTATTCAGATTGACTTTTGATATTCCAAACAGCTTGAAACCACAtggaatctgatttttttaatgggTTGTATCCACTTTGATTTATGATAATGTGAACAGCCTTAAAACCAAATACAATCTGATTTTTGGAACaactagattgtatccagattgttTTTGATAGTCTGAACAGCTCAACACCAcgtgaaatcagatttttggtgttttatgGGTTACATCCAGATTGTTTGTGATAGTCTGACCAGcatcaaactaaataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188099 True 1417 lncRNA 0.34 2 4735636 4737366

Neighbor

gene id symbol gene type direction distance location
blvra blvra coding upstream 1721 4728467 ~ 4733915 (+)
LOC103038785 NA coding upstream 15992 4714115 ~ 4719644 (+)
LOC103026534 LOC108428888,LOC108268317 coding upstream 77494 4645001 ~ 4658142 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding upstream 341992 4385618 ~ 4393644 (+)
extl2 extl2 coding upstream 391307 4339083 ~ 4344329 (+)
LOC103039605 NA coding downstream 20476 4757842 ~ 4761690 (+)
LOC103040234 keap1a,LOC108428896,LOC107749088,LOC107678690,LOC107721712,LOC108268010,LOC107690048 coding downstream 87264 4824630 ~ 4854002 (+)
znf622 znf622,LOC107721690 coding downstream 270770 5008136 ~ 5016931 (+)
d2hgdh d2hgdh,LOC107749221,LOC107678686 coding downstream 280568 5017934 ~ 5026288 (+)
LOC103028041 otomp,LOC108428860,LOC107678687,LOC108267868,LOC107602611,LOC107690301 coding downstream 310786 5048152 ~ 5057696 (+)
G138941 NA non-coding upstream 78252 4657060 ~ 4657384 (+)
G138925 NA non-coding upstream 208865 4526570 ~ 4526771 (+)
G138922 NA non-coding upstream 222830 4512596 ~ 4512806 (+)
G138859 NA non-coding upstream 337031 4397227 ~ 4398605 (+)
G138858 NA non-coding upstream 338685 4396080 ~ 4396951 (+)
G138945 NA non-coding downstream 525 4737891 ~ 4738436 (+)
G138969 NA non-coding downstream 53134 4790500 ~ 4790958 (+)
G138976 NA non-coding downstream 165507 4902873 ~ 4903590 (+)
G138977 NA non-coding downstream 170379 4907745 ~ 4936889 (+)
G138978 NA non-coding downstream 188265 4925631 ~ 4925971 (+)
LOC103026815 LOC108428843 other upstream 12862 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other upstream 26973 4703346 ~ 4708663 (+)
G138839 NA other upstream 489772 4237609 ~ 4245864 (+)
LOC103023077 NA other upstream 563626 4165943 ~ 4172010 (+)
LOC111194271 NA other upstream 633395 4095997 ~ 4102241 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 152507 4889873 ~ 5007006 (+)
G139154 NA other downstream 718114 5455480 ~ 5456004 (+)
LOC107197321 NA other downstream 1322051 6059417 ~ 6060050 (+)
LOC103021569 NA other downstream 1408597 6145963 ~ 6155929 (+)
G139268 NA other downstream 1422354 6159720 ~ 6164164 (+)

Expression


Co-expression Network