G138976


Basic Information

Item Value
gene id G138976
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4902873 ~ 4903590 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188140
TCCTATTTTGGCAAACAGGGTTTACTATAAAACCTCTTCAGACAGAATCGGAATTGTAATCTAGAGTCACTGAACAACAGTGATGTGCATGGCAGGTTTGCAAGGAAGGAAAGCTAAAAAGAACGTTTTTGCTGATCTGCGGTTTGCTAAAGGTCACATGGACAAGCCAGATAGCTACTGGAAGAAAGTgataataaacaatgcagggccatTGATGCCACCAGCACCGCCTCCACCAGCGTGCTGTCTCGTTTCCAGactgatcaagagctgagtcggCGCCGAActctcaaaacccgagaaaaacagcaaaagaacaGTAGTCTGCCCTTTAATATgtcatttaaatggcttttttaaaaggtaaatacaaGTTTTATTaatctgggattaaaagcgtgaattcagctgtaactggaaatatctgcgctgcaaaactgtgctggactgaggagcacagctttcaacagcacgcttctcaggcagcagcagcctgtcactcacacagacacagagacagcgctgtgtatcttttttttgtgtcaagaatcaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188140 True 555 lncRNA 0.43 2 4902873 4903590

Neighbor

gene id symbol gene type direction distance location
LOC103040234 keap1a,LOC108428896,LOC107749088,LOC107678690,LOC107721712,LOC108268010,LOC107690048 coding upstream 48871 4824630 ~ 4854002 (+)
LOC103039605 NA coding upstream 141183 4757842 ~ 4761690 (+)
blvra blvra coding upstream 168958 4728467 ~ 4733915 (+)
LOC103038785 NA coding upstream 183229 4714115 ~ 4719644 (+)
LOC103026534 LOC108428888,LOC108268317 coding upstream 244731 4645001 ~ 4658142 (+)
znf622 znf622,LOC107721690 coding downstream 104546 5008136 ~ 5016931 (+)
d2hgdh d2hgdh,LOC107749221,LOC107678686 coding downstream 114344 5017934 ~ 5026288 (+)
LOC103028041 otomp,LOC108428860,LOC107678687,LOC108267868,LOC107602611,LOC107690301 coding downstream 144562 5048152 ~ 5057696 (+)
rnf220 rnf220,rnf220a coding downstream 226212 5129802 ~ 5276475 (+)
klf17 LOC103372686,LOC107599908,LOC107657420,LOC107739832 coding downstream 528684 5432274 ~ 5435044 (+)
G138969 NA non-coding upstream 111915 4790500 ~ 4790958 (+)
G138945 NA non-coding upstream 164437 4737891 ~ 4738436 (+)
G138944 NA non-coding upstream 165507 4735636 ~ 4737366 (+)
G138941 NA non-coding upstream 245489 4657060 ~ 4657384 (+)
G138925 NA non-coding upstream 376102 4526570 ~ 4526771 (+)
G138977 NA non-coding downstream 4155 4907745 ~ 4936889 (+)
G138978 NA non-coding downstream 22041 4925631 ~ 4925971 (+)
G138987 NA non-coding downstream 125222 5028812 ~ 5030860 (+)
G139082 NA non-coding downstream 393288 5296878 ~ 5297285 (+)
G139097 NA non-coding downstream 414977 5318567 ~ 5318830 (+)
LOC103026815 LOC108428843 other upstream 180099 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other upstream 194210 4703346 ~ 4708663 (+)
G138839 NA other upstream 657009 4237609 ~ 4245864 (+)
LOC103023077 NA other upstream 730863 4165943 ~ 4172010 (+)
LOC111194271 NA other upstream 800632 4095997 ~ 4102241 (+)
G139154 NA other downstream 551890 5455480 ~ 5456004 (+)
LOC107197321 NA other downstream 1155827 6059417 ~ 6060050 (+)
LOC103021569 NA other downstream 1242373 6145963 ~ 6155929 (+)
G139268 NA other downstream 1256130 6159720 ~ 6164164 (+)
LOC103028159 NA other downstream 1331844 6235434 ~ 6242571 (+)

Expression


Co-expression Network