G139110


Basic Information

Item Value
gene id G139110
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5344829 ~ 5346034 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188320
caggggcgtagcagcaaattctgggccctgtacactcgcaatgtcagtgggcccctatcaaGTACATGAAGAACGTGAGCAAAAAAGCGgtatttatctaaaataaaaagcattaataaagttttaagctacaatctctggcaaaaatatatggcaaaaatcatgatcacaattatttttgattaatattgAGATCACAGTTATTTAACATGATTATTAACTGGCTTTGGTAACATCATGAATTTATTGAGCGTTGATAATAGCTTTTTAAGCACTGCACTGCAATGCTAAGGCTTTTTACCagacaaaaataatcaattgCTTTATTGCTTAATATATTACTAGTGTGTACTCGCACCTACAGAGATATTGGTAGGCTATTTACATGTTGATATATGCAGCAGAAATATTGCTAGGTGGATCATTTATTAAGTCTCAGCACTGTTTCTCtttcagctctgctgtgttaGTAGACAATAGGCTATAGCACACGCACTGaaccaaaataataacttacttataacttataataaatctctctctctctctctctctctctcttgaacCAACATACCAACGTAAGGGGGAGTTTCTAAGACCGGTTAATGTCGATATCTAACCTTACGCGGCTCAGAATTACCTTTATtcttacagcagcagcagcctggttGGTAATTTGCTAAGCTAACGGCTTCACGTGAGCATAcagacatcagcagcagctgtgtggaGAGGACTACATTAACTTTAATTACACTTAGCATAACAAGCAAACTCTGTTCACCTTTGGGAAAGAAAGCCGTCAACAGCTGCCTCCCCTCACTctgccttctttctttcttcttctgatAACCTGATTTCTGTTTTAGGGGCAGCATGAAGTctctaacccccccccgggtCGCTGTCGGGCGGACCAAACCATCTTGCGCCTCCAGGAGGGGGCTCCCAGAATGTCCCATATGTTGAGAGGACTGTAACTAAAGTTAATTCTCTCAGTAGATGTtatcaataatttttgataGATTAATTAAGAAATAGTTAATTAGAGGGCccaattcaataataaaaataccacttaaaaataaatgaataaatcaggaTTTgtatgggcccctctccctacttgggccctgggtagtcaggtccacttttccccccactaccacgcccatgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188320 True 1177 lncRNA 0.40 2 5344829 5346034

Neighbor

gene id symbol gene type direction distance location
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding downstream 299820 5031419 ~ 5045009 (-)
LOC103027391 crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 539162 4771793 ~ 4805667 (-)
LOC103039917 LOC103039917,LOC108428861,LOC107602632,LOC107749223,LOC108267126,LOC107721708,LOC107588920 coding downstream 577536 4761753 ~ 4767293 (-)
LOC103039099 wdr48,LOC103039099,LOC108428893,LOC108268031 coding downstream 596076 4738988 ~ 4748753 (-)
LOC103038044 coa1,LOC103038044,LOC108428892,LOC108267121,LOC107600219 coding downstream 617301 4723386 ~ 4727528 (-)
ccdc24 NA coding upstream 221150 5567184 ~ 5598775 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding upstream 278825 5624859 ~ 5898800 (-)
LOC103034342 NA coding upstream 631233 5977267 ~ 5997977 (-)
LOC111194226 NA coding upstream 675064 6021098 ~ 6022596 (-)
LOC103029970 NA coding upstream 856774 6202808 ~ 6205849 (-)
G139108 NA non-coding downstream 2015 5342481 ~ 5342814 (-)
G139098 NA non-coding downstream 26013 5318574 ~ 5318816 (-)
G139073 NA non-coding downstream 68790 5209187 ~ 5276039 (-)
G139052 NA non-coding downstream 310636 5032128 ~ 5034193 (-)
G139040 NA non-coding downstream 316124 5027920 ~ 5028705 (-)
G139149 LOC108415780 non-coding upstream 95752 5441786 ~ 5442427 (-)
G139150 NA non-coding upstream 96522 5442556 ~ 5442906 (-)
G139155 NA non-coding upstream 109712 5455746 ~ 5456022 (-)
G139440 NA non-coding upstream 190915 5536949 ~ 5614729 (-)
G139435 slc6a9,LOC107739827 non-coding upstream 199210 5545244 ~ 5552062 (-)
G139105 NA other downstream 14024 5330078 ~ 5330805 (-)
G139074 NA other downstream 68361 5276106 ~ 5276468 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 1006632 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 1483473 3847722 ~ 3861356 (-)
G138708 NA other downstream 1511159 3832721 ~ 3833670 (-)
G139489 NA other upstream 663019 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 676575 6022609 ~ 6054733 (-)
G139487 NA other upstream 958935 6304969 ~ 6374709 (-)
G139587 NA other upstream 1071351 6417385 ~ 6430319 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 1218869 6564903 ~ 6689723 (-)

Expression


Co-expression Network