G139149 (LOC108415780)


Basic Information

Item Value
gene id G139149
gene name LOC108415780
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5441786 ~ 5442427 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188362
aagaaatagagccggctctgtcccttcctgtacagggtgtctgtatttgttgaccaatccagtttgttgtccagctgcagaccaaggtacttgtaggtcttcactgtctccacatcaaccccctcgatggagactggctgcaagggtggtccagacctacggaagtccaccaccatctccttggtcttggatatgttcaactgcagttggttcagtcggcaccaagcaacaaagtcatccacctgtctcttgtactcctcctcctgaccacccttcacacacccaacgatggcagtgtcatccgagaatttctgcaggtggcacatctcagagttgtactggaagtctgatgtgtagagagtgaagaggaagggggagagcacagtcccctgtggtgctccagtgctactgaccacagtctccgatgtgccgtcagtgagcctcacgtactgtggtctgcaggtgaggtagtctgtgatccaggacaccaggtgaggatccacattcatcttcaccagcttgtctctgagaagtggaggctggatggtgttaaaagcactggagaaatcaaaaaacatgattctcacaGCACTACTCCCCTTGTCAAGATGAGAGTAGGTTCGGTGGAGGAGGTAGATGACT

Function

NR:

description
PREDICTED: protein NLRC5-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188362 True 642 lncRNA 0.52 1 5441786 5442427

Neighbor

gene id symbol gene type direction distance location
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding downstream 396777 5031419 ~ 5045009 (-)
LOC103027391 crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 636119 4771793 ~ 4805667 (-)
LOC103039917 LOC103039917,LOC108428861,LOC107602632,LOC107749223,LOC108267126,LOC107721708,LOC107588920 coding downstream 674493 4761753 ~ 4767293 (-)
LOC103039099 wdr48,LOC103039099,LOC108428893,LOC108268031 coding downstream 693033 4738988 ~ 4748753 (-)
LOC103038044 coa1,LOC103038044,LOC108428892,LOC108267121,LOC107600219 coding downstream 714258 4723386 ~ 4727528 (-)
ccdc24 NA coding upstream 124757 5567184 ~ 5598775 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding upstream 182432 5624859 ~ 5898800 (-)
LOC103034342 NA coding upstream 534840 5977267 ~ 5997977 (-)
LOC111194226 NA coding upstream 578671 6021098 ~ 6022596 (-)
LOC103029970 NA coding upstream 760381 6202808 ~ 6205849 (-)
G139110 NA non-coding downstream 95752 5344829 ~ 5346034 (-)
G139108 NA non-coding downstream 98972 5342481 ~ 5342814 (-)
G139098 NA non-coding downstream 122970 5318574 ~ 5318816 (-)
G139073 NA non-coding downstream 165747 5209187 ~ 5276039 (-)
G139052 NA non-coding downstream 407593 5032128 ~ 5034193 (-)
G139150 NA non-coding upstream 129 5442556 ~ 5442906 (-)
G139155 NA non-coding upstream 13319 5455746 ~ 5456022 (-)
G139440 NA non-coding upstream 94522 5536949 ~ 5614729 (-)
G139435 slc6a9,LOC107739827 non-coding upstream 102817 5545244 ~ 5552062 (-)
G139443 NA non-coding upstream 130710 5573137 ~ 5744889 (-)
G139105 NA other downstream 110981 5330078 ~ 5330805 (-)
G139074 NA other downstream 165318 5276106 ~ 5276468 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 1103589 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 1580430 3847722 ~ 3861356 (-)
G138708 NA other downstream 1608116 3832721 ~ 3833670 (-)
G139489 NA other upstream 566626 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 580182 6022609 ~ 6054733 (-)
G139487 NA other upstream 862542 6304969 ~ 6374709 (-)
G139587 NA other upstream 974958 6417385 ~ 6430319 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 1122476 6564903 ~ 6689723 (-)

Expression


Co-expression Network