LOC103044361 (nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802)


Basic Information

Item Value
gene id LOC103044361
gene name nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7041560 ~ 7046298 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188724
gcctctctctctctcactactgTGGATATTCTGTGTTCAGTCTGAATCATTTAATACGGTTTAGAATCTGTAAATCTGGTTTAATTGCTGAATTAAActgctcctcttctctctctctctctctgatctgaAGTTCATCCGCCAGCATGCTGATTAAAGTGAAGACCCTCACAGGCAAAGAAATAGAGATCGACATTGAGCCCACAGATAAGGTGGAAAGAATCAAAGAACGTGTTGAAGAAAAGGAAGGGATCCCACCACAGCAGCAAAGACTGATCTACAGCGGGaaacaaatGAACGATGAGAAAACAGCGTCTGACTATAAGATCCAGGGAGGATCTGTACTGCATTTGGTCCTGGCGCTCAGAGGAGGCAGAATAATCTACTGACCCAGTCCCCCACCAGCGCTCATAGAacctgagcttttttttttgtttttttgagtcTAGCACAGAAGTGGAGATACAATGTTTTTCcctgttttaaaaagttaactATTCCTCAAGTCCTGAGAGGAAGAGAAGCAAATGTTCTATTGTGTAATTTAGACCCTTATTTCATTGCAGTGCTGTCCTGTGTGCTGAGCTAAATAGCGAGACACGCCCACTTCAGTCCTGTATGTTTGAGCCCTGTACTGTTGGGTATTGTTGTGTTGTATGCAAAgattgttttataaaaaaataaataaataaaatgatttaattttgtG
>XM_007258052.2
TACAGGGTTGGTTCAGTGCTCTGAGCTGGGCGGATTGGGAGCTGTGCGCTATCCGGCCTGTAGGTGTCACTGTGGAGCTGCTGTGCTCATTTTCTCACAGTCGAGGAAGatccagcctctctctctctcactactgTGGATATTCTGTGTTCAGTCTGAATCATTTAATACGGTTTAGAATCTGTAAATCTGGTTTAATTGCTGAATTAAActgctcctcttctctctctctctctctgatctgaAGTTCATCCGCCAGCATGCTGATTAAAGTGAAGACCCTCACAGGCAAAGAAATAGAGATCGACATTGAGCCCACAGATAAGGTGGAAAGAATCAAAGAACGTGTTGAAGAAAAGGAAGGGATCCCACCACAGCAGCAAAGACTGATCTACAGCGGGaaacaaatGAACGATGAGAAAACAGCGTCTGACTATAAGATCCAGGGAGGATCTGTACTGCATTTGGTCCTGGCGCTCAGAGGAGGCAGAATAATCTACTGACCCAGTCCCCCACCAGCGCTCATAGAacctgagcttttttttttgtttttttgagtcTAGCACAGAAGTGGAGATACAATGTTTTTCcctgttttaaaaagttaactATTCCTCAAGTCCTGAGAGGAAGAGAAGCAAATGTTCTATTGTGTAATTTAGACCCTTATTTCATTGCAGTGCTGTCCTGTGTGCTGAGCTAAATAGCGAGACACGCCCACTTCAGTCCTGTATGTTTGAGCCCTGTACTGTTGGGTATTGTTGTGTTGTATGCAAAgattgttttataaaaaaataaataaataaaatgatttaattttgtGGTTCATTCTG

Function

symbol description
nedd8 Predicted to enable protein tag and ubiquitin protein ligase binding activity. Acts upstream of or within defense response to virus. Predicted to be active in cytoplasm and nucleus. Is expressed in brain. Orthologous to human NEDD8 (NEDD8 ubiquitin like modifier).

NR:

description
PREDICTED: NEDD8-like

GO: NA

KEGG:

id description
K12158 NEDD8; ubiquitin-like protein Nedd8

RNA

RNA id representative length rna type GC content exon number start site end site
TU188724 False 709 TUCP 0.41 4 7041674 7046288
XM_007258052.2 True 833 mRNA 0.43 4 7041560 7046298

Neighbor

gene id symbol gene type direction distance location
LOC103043453 NA coding upstream 23030 7005464 ~ 7018530 (+)
LOC103024705 NA coding upstream 37311 6995553 ~ 7004249 (+)
LOC111194294 NA coding upstream 52189 6975971 ~ 6989371 (+)
LOC103043149 dhrs1 coding upstream 72361 6958536 ~ 6969199 (+)
c16h14orf119 NA coding upstream 91416 6945678 ~ 6950144 (+)
LOC103025339 psmb11,LOC102219341 coding downstream 113722 7160020 ~ 7162262 (+)
psmb5 psmb5,LOC108438927,LOC107668975,LOC107558100,LOC107706341,LOC107694665 coding downstream 118486 7164784 ~ 7184403 (+)
LOC103025648 NA coding downstream 184238 7230536 ~ 7250133 (+)
LOC103025951 cdh24,LOC108442582,LOC107591395 coding downstream 288706 7335004 ~ 7654533 (+)
LOC107197863 NA coding downstream 641809 7688107 ~ 7693776 (+)
LOC111194296 NA non-coding upstream 2180 7029282 ~ 7039380 (+)
G139375 NA non-coding upstream 108087 6931518 ~ 6933473 (+)
G139371 NA non-coding upstream 131899 6853944 ~ 6909661 (+)
G139362 cbln12,LOC103040079,LOC108438942,LOC107738140,LOC107591379,LOC107668986,LOC107557939,LOC107704284 non-coding upstream 218874 6821915 ~ 6822686 (+)
G139347 NA non-coding upstream 273316 6768023 ~ 6768244 (+)
G139395 NA non-coding downstream 120 7046418 ~ 7049729 (+)
G139401 NA non-coding downstream 40679 7086977 ~ 7087682 (+)
G139710 NA non-coding downstream 145610 7191908 ~ 7192404 (+)
G139712 NA non-coding downstream 156634 7202932 ~ 7203256 (+)
G139737 NA non-coding downstream 429672 7475970 ~ 7476346 (+)
dhx9 dhx9 other upstream 299491 6718238 ~ 6742069 (+)
G139282 NA other upstream 774173 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 798989 6235434 ~ 6242571 (+)
G139268 NA other upstream 877396 6159720 ~ 6164164 (+)
LOC103021569 NA other upstream 885631 6145963 ~ 6155929 (+)
LOC103030954 NA other downstream 2115035 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 2173976 9220274 ~ 9223981 (+)
G140062 NA other downstream 2493477 9539775 ~ 9540810 (+)
G140103 NA other downstream 2697400 9743698 ~ 9745355 (+)
G140258 NA other downstream 2943620 9989918 ~ 9990296 (+)

Expression


Co-expression Network