G139554


Basic Information

Item Value
gene id G139554
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6181805 ~ 6183395 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188932
CACTAAACGTCCTAAACTCGACGACATCAgattttagagaagttgattgtgatcatgTCTTGTAATACTGTGAAGGCTACATTTCAAGCTCACCTTCAGGGCAGTCGCTCGACTCCCACGGCATCTTGGGTCTCTGCTAGTCGGCTGAAGCGCTGCCCGGTCGTGTGCTGCGCTTTTTTCTCTAGTGAAGCGTGCTGCATGTCCCCCGCTATGCCCGTGCCCCTCCCTCTCgaggtgtctgaatctgaatgattgactctgaaaactttgttttacgaaacttcaatcaaaattacgaattatgaagaaaatcttgttaaaatatgaaatcatatttgccaatattattttttcccctccctcggaagggcaatatcagccaaggacggcaaaagggcagttgcccaagcacattgggcTATAGCGCTGGCACGTCACTGCTCATGCACGTTCACACGGTCTTTGAGGTCTTTGGACCAGTTGCTCCTGGCTGTTCCTTGGTCTTGGATAAATCTCAGGGGTGATCAAGACTTCGCATTTGCAGCACCACAAATTTGGATACCTCTGTTTATCAAAACAAggctttttttatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188932 True 594 lncRNA 0.46 2 6181805 6183395

Neighbor

gene id symbol gene type direction distance location
LOC111194226 NA coding downstream 159209 6021098 ~ 6022596 (-)
LOC103034342 NA coding downstream 183828 5977267 ~ 5997977 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding downstream 283005 5624859 ~ 5898800 (-)
ccdc24 NA coding downstream 583030 5567184 ~ 5598775 (-)
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding downstream 1136796 5031419 ~ 5045009 (-)
LOC103029970 NA coding upstream 19413 6202808 ~ 6205849 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding upstream 256254 6439649 ~ 6473720 (-)
lamc2 NA coding upstream 327702 6511097 ~ 6549467 (-)
LOC103038610 NA coding upstream 520974 6704369 ~ 6717087 (-)
LOC103024388 chd8,LOC107738141 coding upstream 585926 6769321 ~ 6813886 (-)
LOC111194291 NA non-coding downstream 12301 6165572 ~ 6169504 (-)
LOC103026010 NA non-coding downstream 57680 6120119 ~ 6124125 (-)
LOC111194293 NA non-coding downstream 95009 6085872 ~ 6086796 (-)
G139527 NA non-coding downstream 120627 6042266 ~ 6061178 (-)
G139528 NA non-coding downstream 137074 6043216 ~ 6044731 (-)
G139497 NA non-coding upstream 15088 6198483 ~ 6232082 (-)
G139563 NA non-coding upstream 53455 6236850 ~ 6242234 (-)
G139501 NA non-coding upstream 62040 6245435 ~ 6246729 (-)
G139579 NA non-coding upstream 115475 6298870 ~ 6299122 (-)
G139580 NA non-coding upstream 118131 6301526 ~ 6301757 (-)
LOC111194281 NA other downstream 127072 6022609 ~ 6054733 (-)
G139489 NA other downstream 170938 6009053 ~ 6010867 (-)
G139105 NA other downstream 851000 5330078 ~ 5330805 (-)
G139074 NA other downstream 905337 5276106 ~ 5276468 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 1843608 4330871 ~ 4338197 (-)
G139487 NA other upstream 121574 6304969 ~ 6374709 (-)
G139587 NA other upstream 233990 6417385 ~ 6430319 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 381508 6564903 ~ 6689723 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 658585 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 985570 7168965 ~ 7182783 (-)

Expression


Co-expression Network