G139580


Basic Information

Item Value
gene id G139580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6301526 ~ 6301757 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188964
tgtgcaaagtgcgctgtattgttgaccgatgcacagtgactccatctgcagcaagatgatgctgcagctctttggaggtggtctgtggattgtccttgactgttctcaccattcttcttctctgcctttctgatatttttcttggcctgccacttctgggcttaacaagaactgtccctgtggtcttccatttccttactatgttcctcacagtggaaactgacaggttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188964 True 232 lncRNA 0.47 1 6301526 6301757

Neighbor

gene id symbol gene type direction distance location
LOC103029970 NA coding downstream 95677 6202808 ~ 6205849 (-)
LOC111194226 NA coding downstream 278930 6021098 ~ 6022596 (-)
LOC103034342 NA coding downstream 303549 5977267 ~ 5997977 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding downstream 402726 5624859 ~ 5898800 (-)
ccdc24 NA coding downstream 702751 5567184 ~ 5598775 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding upstream 137892 6439649 ~ 6473720 (-)
lamc2 NA coding upstream 209340 6511097 ~ 6549467 (-)
LOC103038610 NA coding upstream 402612 6704369 ~ 6717087 (-)
LOC103024388 chd8,LOC107738141 coding upstream 467564 6769321 ~ 6813886 (-)
LOC103040079 cbln12,LOC103040079,LOC108438942,LOC107668986,LOC107591379,LOC108267329,LOC107704284,LOC107738140,LOC107557939 coding upstream 518071 6819828 ~ 6826665 (-)
G139579 NA non-coding downstream 2404 6298870 ~ 6299122 (-)
G139501 NA non-coding downstream 54797 6245435 ~ 6246729 (-)
G139563 NA non-coding downstream 59292 6236850 ~ 6242234 (-)
G139497 NA non-coding downstream 69444 6198483 ~ 6232082 (-)
G139554 NA non-coding downstream 118131 6181805 ~ 6183395 (-)
G139593 NA non-coding upstream 33010 6334767 ~ 6415371 (-)
G139500 NA non-coding upstream 104465 6406222 ~ 6408592 (-)
G139588 NA non-coding upstream 207595 6509352 ~ 6581814 (-)
G139624 dhx9 non-coding upstream 427948 6729705 ~ 6731658 (-)
G139618 dhx9 non-coding upstream 434336 6736093 ~ 6738942 (-)
LOC111194281 NA other downstream 246793 6022609 ~ 6054733 (-)
G139489 NA other downstream 290659 6009053 ~ 6010867 (-)
G139105 NA other downstream 970721 5330078 ~ 5330805 (-)
G139074 NA other downstream 1025058 5276106 ~ 5276468 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 1963329 4330871 ~ 4338197 (-)
G139487 NA other upstream 3212 6304969 ~ 6374709 (-)
G139587 NA other upstream 115628 6417385 ~ 6430319 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 263146 6564903 ~ 6689723 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 540223 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 867208 7168965 ~ 7182783 (-)

Expression


Co-expression Network