G139631


Basic Information

Item Value
gene id G139631
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6753982 ~ 6754437 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189027
tcttttattgtaaataatttaatttcagtCATCATCGTCATCGTCGTCGTCGTCATCAtcgccatcatcatcatcatcatcatcatcatcgtcatcatcatcttcatcgcTGCCATCATCGTCGTCATCTTCATCATCGTCATCGGCTTCATCGTTGTCGTCATCATGTTCGTCATCAGCAGCATCTTCACTATCATTATCTCCATCAGGGTCAATTTCCCCCTCCAGAACGTCCATCAGCCAGTCCTCCAGCTCAGCAGGTGTTGGCATATCATCATGGTCATCCATCTCCAGCCATATACTATCGGCCTGAAATCAGAAGATTAAAGAACAGTTAATGCTTAATTCTTTAGCTCTTATTCTGAGACATGAGCTAGCAAGTGgatggttgtgggttcaaatCCAAGGACTAGCTGGGTTCTCGTGGTTGTG

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU189027 True 432 lncRNA 0.44 2 6753982 6754437

Neighbor

gene id symbol gene type direction distance location
LOC103038610 NA coding downstream 36895 6704369 ~ 6717087 (-)
lamc2 NA coding downstream 204515 6511097 ~ 6549467 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding downstream 280262 6439649 ~ 6473720 (-)
LOC103029970 NA coding downstream 548133 6202808 ~ 6205849 (-)
LOC111194226 NA coding downstream 731386 6021098 ~ 6022596 (-)
LOC103024388 chd8,LOC107738141 coding upstream 14884 6769321 ~ 6813886 (-)
LOC103040079 cbln12,LOC103040079,LOC108438942,LOC107668986,LOC107591379,LOC108267329,LOC107704284,LOC107738140,LOC107557939 coding upstream 65391 6819828 ~ 6826665 (-)
LOC103040380 LOC108438941 coding upstream 74315 6828752 ~ 6840206 (-)
rnf212b rnf212b coding upstream 264627 7019064 ~ 7028638 (-)
LOC103043766 NA coding upstream 275259 7029696 ~ 7032955 (-)
G139618 dhx9 non-coding downstream 15040 6736093 ~ 6738942 (-)
G139624 dhx9 non-coding downstream 22324 6729705 ~ 6731658 (-)
G139588 NA non-coding downstream 172168 6509352 ~ 6581814 (-)
G139593 NA non-coding downstream 338611 6334767 ~ 6415371 (-)
G139500 NA non-coding downstream 345390 6406222 ~ 6408592 (-)
G139632 NA non-coding upstream 3039 6757476 ~ 6757830 (-)
G139633 NA non-coding upstream 4755 6759192 ~ 6759466 (-)
G139635 NA non-coding upstream 11527 6765964 ~ 6767519 (-)
G139658 NA non-coding upstream 99549 6853986 ~ 6856889 (-)
G139649 NA non-coding upstream 191321 6945758 ~ 6948035 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 64259 6564903 ~ 6689723 (-)
G139587 NA other downstream 323663 6417385 ~ 6430319 (-)
G139487 NA other downstream 379273 6304969 ~ 6374709 (-)
LOC111194281 NA other downstream 699249 6022609 ~ 6054733 (-)
G139489 NA other downstream 743115 6009053 ~ 6010867 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 87543 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 414528 7168965 ~ 7182783 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 1916587 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 2942718 9697155 ~ 9714037 (-)
G140342 NA other upstream 3280966 10035403 ~ 10103457 (-)

Expression


Co-expression Network