G139635


Basic Information

Item Value
gene id G139635
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6765964 ~ 6767519 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189031
taaaaaaaaaaaacacaataaaagtgGTTTTACTTTTCCAGTGTTAAACAAAGGTTACAAGACCATGTACAGTAAATCAAGAGGAACAGAAGAACAGAGGCTGCAACGGAATATATGTGTATGTTGTAGtatatttctgcaaatatgACCAAATTATAGAATAAGTAAATACAACTCTGTCCAtagaaaaaagaatgaaataaatgaCGATAAAACCAGCCTGTGTGGAAAAGAGATTATGGTAAAAAAttaagatgattttttttacactgtgaaTCAGTTTTCCTGTAAGGGATTAGGGTAAACTAGAttttgttttaccatattttttctcattataaggtgcatttaaaatcctttaattttccctgGAGCACCTTATGTATCAGTTTAATTAGTagtagccgctaaccgcactagctctttcgccgttcagaggtattatcttcctgtagcctgctgctatcctcggctagcactgctggagaagcattagccgctaagcgctagctgtttcggcattcagaggcgagtattaacgcactgtagtctgcatatttaccgtgttaaaacaagctatgtgggatgaaccacaagttaacatcgccctggcttactggatcactcagggttcctcagtatagcgctgttgggtggcatttactagcggttagctgctaatgctagcgCTGCTGAAcctagaaatctaagcttgctgtaaataaacagaagcacttcactcagccaaataaacagttttcaggagagaaatctgtgtagattaacattcagtgctcgtttgacttttttttttttttaaacaattacagttttgtttacttagcttagctttacaggtctcaccacccagcagtgaattagaaggaaaacatggtgacacccctgttccttactagtgtcgcataatgcgcctaataatctggtgcgccttatagtgcggaaaatacagtaaatgaaaATTACACAGTACTGCTAATTTAGCAGGACTCTCtcaagcagataaacatgaagcTGTGAGACAATGAAACTtagttctctggaatgattgaGCTCCATCTCCAGTACTTGAGGGAATTGGGAATGATTAATTGAGGTGGTAAACACTCAAGATCCTGACCTCATGTCACTgcaatgaatgcaatcaaatccttgcAGCAATTATCTAAAATCGAATACAGTAGTATCTAAAATAGGATTAATATAGTAAAATCTGAGCAGTAGATAATGTAGctccaacaaaataaaatgattttaggAGAAAAGATAATTCAGCTGCTGACACACTTCTGTTGGCTTACCTGTACATGTATTTGCAGCACTGCTTGCACAAATAATCTTCATGGCAGAGTACAAGAAGAAGCAGAATCAGTAAATTCGATATTTGCTAAATGCTACAGAACATCTAGATAAGTCTAATAGATTTGGGGGGAAAAAGTGTTGTTgactgattaattaaaaaaaagaagatacacATTTCACAAAAAGTTCCAAAACTTCCACCTACctaactgtgaagcatgggggcgGATGTATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189031 True 1556 lncRNA 0.37 1 6765964 6767519

Neighbor

gene id symbol gene type direction distance location
LOC103038610 NA coding downstream 48877 6704369 ~ 6717087 (-)
lamc2 NA coding downstream 216497 6511097 ~ 6549467 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding downstream 292244 6439649 ~ 6473720 (-)
LOC103029970 NA coding downstream 560115 6202808 ~ 6205849 (-)
LOC111194226 NA coding downstream 743368 6021098 ~ 6022596 (-)
LOC103024388 chd8,LOC107738141 coding upstream 1802 6769321 ~ 6813886 (-)
LOC103040079 cbln12,LOC103040079,LOC108438942,LOC107668986,LOC107591379,LOC108267329,LOC107704284,LOC107738140,LOC107557939 coding upstream 52309 6819828 ~ 6826665 (-)
LOC103040380 LOC108438941 coding upstream 61233 6828752 ~ 6840206 (-)
rnf212b rnf212b coding upstream 251545 7019064 ~ 7028638 (-)
LOC103043766 NA coding upstream 262177 7029696 ~ 7032955 (-)
G139633 NA non-coding downstream 6498 6759192 ~ 6759466 (-)
G139632 NA non-coding downstream 8134 6757476 ~ 6757830 (-)
G139631 NA non-coding downstream 11527 6753982 ~ 6754437 (-)
G139618 dhx9 non-coding downstream 27022 6736093 ~ 6738942 (-)
G139624 dhx9 non-coding downstream 34306 6729705 ~ 6731658 (-)
G139658 NA non-coding upstream 86467 6853986 ~ 6856889 (-)
G139649 NA non-coding upstream 178239 6945758 ~ 6948035 (-)
G139647 dhrs1,LOC107591385,LOC107738130 non-coding upstream 191023 6958542 ~ 6969153 (-)
G139691 LOC103358415,LOC107668969,LOC108438931,LOC107562413,LOC107588156,LOC106608856,LOC106577802 non-coding upstream 274071 7041590 ~ 7046262 (-)
G139694 NA non-coding upstream 289301 7056820 ~ 7059299 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 76241 6564903 ~ 6689723 (-)
G139587 NA other downstream 335645 6417385 ~ 6430319 (-)
G139487 NA other downstream 391255 6304969 ~ 6374709 (-)
LOC111194281 NA other downstream 711231 6022609 ~ 6054733 (-)
G139489 NA other downstream 755097 6009053 ~ 6010867 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 74461 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 401446 7168965 ~ 7182783 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 1903505 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 2929636 9697155 ~ 9714037 (-)
G140342 NA other upstream 3267884 10035403 ~ 10103457 (-)

Expression


Co-expression Network