G139658


Basic Information

Item Value
gene id G139658
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6853986 ~ 6856889 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189072
aCAGGACACAAACAACCTAATTAAGACACGGGTTAATTGTACAactgtatatacattatatattaaagaTTTTGTGGACACCGcttataatgaatgcattcagagACTTTACACATTGCTGACACAGTGTGCAACTATATAGAAGTACTGCCAATTCAGGGGGTGCAGGGGTGCAGACACCACTTTGTTTTTCTGGAATAATAGAGATTATGGGATGAGATTACGGTCtagtcactgaatgcaatcaaatcctcagagTGGAAATCAagtagaaagccttctctggacagtagagtgTCTACGACTCCATTagcaggataaactatttttttatacacttgAATTCACAAGAAATAaggaataagcaggtgtcccaatacttttgtccatatagtgtatataaaacatttgaCAAATGCACCATCCAGTTCATTAGAAATGCTCACTTGCATCTTAAAGATTCTGGCCTCTTCTTGGTGGTGGTTACATCTACTTTATAGATACACATTACTTAGGAATTTTCATTGGTCCTTGGTTTCTGAGCATTAGGCCACTGTTAAACAGGTATTACTCGGGTGGTGGACTATTCCTAGCACTGCAGTGAAACACAAAGGCAAGGTAATAGTAGTCAAAACCATAAGCTTAagctatttgttttatttgttagaattatgcttttgttttttcatatttttttacttaatgaaACATAGTGCATCAGTGCCTCAATAAAATGATTTACACTATTGGAAGAATTCATATTggattaaacaaaaataaaacagtttaattAGTTATAGTGAAAGGCATCTAGtagctttatttttaagcaaatacctatacatttcagtttttctacattaaatggcattactgctactgtgagctgattggttggtgaggtGATGCTGATGAGTTACAGCCAGAACACCGAGTTTATgaggtttataactggagtttacgTGATTGGGCTGGTGATTAATGTGTAGATTTATGTGGAGTTCTATTGAAAAAGAATGGCAGCCTATTTTTAAgggtaaaatatattaatatgaaaaGTTGGAACTGTGAACTTACTTAATCTTTTTTCTAAACTAGAACTACGGGGCTCCAAGTACTCCAAGAGCTGCCACTATGTGGTCTTACTAGGTGGATTgctagttcgaatcctgttcatgtagcttgccatcagctaccggagtcCTGAAAGAACACAATTGGAtctgttctctctctgggtgggtacagtagatggcactctttcacCTCATTATTCCTAGGGTGATCAGCACAagtcatctgtgagctgatgtatcagaaccaagtcgctgcgctttcctcctatcctccatcagcagcagtttgaaaagaggcggtggcatTACTAatgatggggggagtcctattgagtgggttgggtaattggcctggTAAAATGGGGGGGATGGGGAAAAAATTAACTAtgtaaactacaaacaacactGGAAATGAATAGCATAGTACCATGATATAGtggtacagtgtttttttttttttgctttagcaTATTGGTGAAATATTATGACACTATCCCAATATTGGGATGTCCTTTCTAATTTATATTGTGAATACAATCTTGTTAGGAGTAGCACTACTGAGATTATTGGGGTTCAGCCGTCAGAAGTCCACCACACAATAACATCCAGTCTACTGCAGATTTATGTTCAGAAACCTACCACCGATTATAAGCTAAATGAAGGTTATGATAAGCTGTTAGGTTACATTTTCTCAATGAGCACCAGAAAGGTATAACCAGCAAGTCAACACTCCTAACAAAGTGGTTGGTAAGTGCATTTAGTATCTTCTTAGAGAAAAACATCCAGATACAGAACACGAACATGGACGTCCAAACAGAGTCACCATAAAAGTCACAAAAGTGGTTACCATCTCACCCAGATCTGAGtgtgttttagtttcagttaGAGAAGCTACACAGACAACAAATACAGCGAAAACTGCGGCAACGATTCTGAACTGATCACCAAGACTTAGAACGACTGACATTTAAGTGAGCTAAATACTACTGATATTTGACACATCACTGACTGCTTATCCAGTGTCAAAACATGACATATTATTGGTTAAAAGTACAgcacaaatacaaattaaagCATTAACAGACAGATATATACAGTTTAGTCTGACTCCCCCGTTTTCAAGCCACAGTTTTTATCCATTTCACTTCAAGGAGTGTTTATATGCAATGAACTATGAGTTAATTCTGGAAGAAGCAATAGAGTGCTGCACAAATAAAAAAAATGGCCACACCACTGAGTCATAAGTGCCAACTATGGGTAGTGGGAGTGTAGCTGGGAAAGCACTGCATTATGGGCCTTGAAAAAACTATGTTTACTGTGGAATGGTAACGCCCATCCAAAGCTTATAAGTCAGAACTCAAGAAAAGCTAAGGTGGTGAATGAAACTGTATAGAACAGTGTAAAAGCTGCCGCAATAGTACAGTgcatttgggaaaaaaatatgaatttgaaGCTAGACGCTAAGACAACCAAAAAATAAACCTCGACtgattaattatgattattttcaGCCTTTGCCCGGCATGTTGGTCTTCAATAACTATTTAATTGAACTTCTCATTTTTCTATTGTGCCCAGTTTTTCAGTGTACTTGCTAGTAAAATTTCAAgtaattagggctgcacaatattggaaaaagaACTGTGCTATATATTACAAATTCAAGGAATGTTCATCCAGTTTTAGGAGAAGTCAATGATTCCACaggtcatgaaaataaaaatactgcaaaatctgtttgatatttaacccttgtgtggtgttcatatttttgttactcgtttactttgttacttgtattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189072 True 2878 lncRNA 0.37 2 6853986 6856889

Neighbor

gene id symbol gene type direction distance location
LOC103040380 LOC108438941 coding downstream 13780 6828752 ~ 6840206 (-)
LOC103040079 cbln12,LOC103040079,LOC108438942,LOC107668986,LOC107591379,LOC108267329,LOC107704284,LOC107738140,LOC107557939 coding downstream 27321 6819828 ~ 6826665 (-)
LOC103024388 chd8,LOC107738141 coding downstream 40100 6769321 ~ 6813886 (-)
LOC103038610 NA coding downstream 136899 6704369 ~ 6717087 (-)
lamc2 NA coding downstream 304519 6511097 ~ 6549467 (-)
rnf212b rnf212b coding upstream 162175 7019064 ~ 7028638 (-)
LOC103043766 NA coding upstream 172807 7029696 ~ 7032955 (-)
LOC103044081 NA coding upstream 177875 7034764 ~ 7040449 (-)
LOC103044685 LOC108438930,LOC107738128,LOC107591391,LOC105021476,LOC106569429 coding upstream 189491 7046380 ~ 7082374 (-)
LOC103044995 slc7a8a,LOC102238406,LOC107668787,LOC107753926,LOC103388347,LOC103475980,LOC108245892,LOC107377273 coding upstream 231742 7088631 ~ 7122759 (-)
G139635 NA non-coding downstream 86467 6765964 ~ 6767519 (-)
G139633 NA non-coding downstream 94520 6759192 ~ 6759466 (-)
G139632 NA non-coding downstream 96156 6757476 ~ 6757830 (-)
G139631 NA non-coding downstream 99549 6753982 ~ 6754437 (-)
G139618 dhx9 non-coding downstream 115044 6736093 ~ 6738942 (-)
G139649 NA non-coding upstream 88869 6945758 ~ 6948035 (-)
G139647 dhrs1,LOC107591385,LOC107738130 non-coding upstream 101653 6958542 ~ 6969153 (-)
G139691 LOC103358415,LOC107668969,LOC108438931,LOC107562413,LOC107588156,LOC106608856,LOC106577802 non-coding upstream 184701 7041590 ~ 7046262 (-)
G139694 NA non-coding upstream 199931 7056820 ~ 7059299 (-)
G139695 NA non-coding upstream 202700 7059589 ~ 7063391 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 164263 6564903 ~ 6689723 (-)
G139587 NA other downstream 423667 6417385 ~ 6430319 (-)
G139487 NA other downstream 479277 6304969 ~ 6374709 (-)
LOC111194281 NA other downstream 799253 6022609 ~ 6054733 (-)
G139489 NA other downstream 843119 6009053 ~ 6010867 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 312076 7168965 ~ 7182783 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 1814135 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 2840266 9697155 ~ 9714037 (-)
G140342 NA other upstream 3178514 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 3454208 10311097 ~ 10345498 (-)

Expression


Co-expression Network