G139781


Basic Information

Item Value
gene id G139781
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8020446 ~ 8020933 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189221
aaaagataaacttaaatatctggagaaatgtgatacactgtatatatactgcatCACTACGTACTATCATTATTTCATGCTTATTTAAGGGGGATGTACAATATTTCACACAAGCTAACTACTTCAAAGAGAGACTCGTCCAGTCTGCCAGACATAATATGGCTGTTTACAATTGGAATTAACCACCAACGACTTTGCACTATGAGTGTTATTATATCTGCAGATCATGCAGATGAGGATTACATGGGTAATATACATAATTTCGTTCtatctttcctttatttttctctcattttgccTTTAAAACGAACTCAGTTTGAGCTTCAAAGGTTATTCAGCAATCTATAGCCACATGCTCCGCCCACTTGGATTACAGCCATGCTCCGAGGGCCACCGTTCTCTCGCAAATACACATGTTCATGTCTTCACTTTGTTcgttttgttggtttgttgattgatatatatat

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

RNA

RNA id representative length rna type GC content exon number start site end site
TU189221 True 467 lncRNA 0.36 2 8020446 8020933

Neighbor

gene id symbol gene type direction distance location
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 5821 7948922 ~ 8014625 (+)
carmil3 carmil3,lrrc16b coding upstream 108675 7741723 ~ 7911771 (+)
LOC103026570 NA coding upstream 291132 7721740 ~ 7729314 (+)
LOC103026260 NA coding upstream 303197 7709316 ~ 7717249 (+)
LOC111194231 NA coding upstream 313904 7698361 ~ 7706542 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding downstream 111353 8132286 ~ 8509323 (+)
LOC111194298 NA coding downstream 550900 8571833 ~ 8573911 (+)
LOC103021839 NA coding downstream 1002164 9023097 ~ 9025014 (+)
LOC111194194 NA coding downstream 1098235 9119168 ~ 9125820 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 1419759 9440692 ~ 9447133 (+)
G139720 NA non-coding upstream 38149 7628240 ~ 7982297 (+)
G139750 NA non-coding upstream 451876 7568367 ~ 7568570 (+)
G139747 NA non-coding upstream 480503 7539659 ~ 7539943 (+)
G139738 NA non-coding upstream 513089 7507052 ~ 7507357 (+)
G139737 NA non-coding upstream 544100 7475970 ~ 7476346 (+)
G139782 NA non-coding downstream 1450 8022383 ~ 8035973 (+)
G139778 copb2,LOC107706339,LOC107583113,LOC107738120,LOC107567551,LOC107694662 non-coding downstream 17962 8038895 ~ 8042442 (+)
G139787 LOC108442840 non-coding downstream 40797 8061730 ~ 8065226 (+)
G139792 NA non-coding downstream 76365 8097298 ~ 8097743 (+)
G139798 NA non-coding downstream 101106 8122039 ~ 8123343 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 974148 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 1278377 6718238 ~ 6742069 (+)
G139282 NA other upstream 1753059 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 1777875 6235434 ~ 6242571 (+)
G139268 NA other upstream 1856282 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 1140400 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 1199341 9220274 ~ 9223981 (+)
G140062 NA other downstream 1518842 9539775 ~ 9540810 (+)
G140103 NA other downstream 1722765 9743698 ~ 9745355 (+)
G140258 NA other downstream 1968985 9989918 ~ 9990296 (+)

Expression


Co-expression Network