G139782


Basic Information

Item Value
gene id G139782
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8022383 ~ 8035973 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189223
TTTTTCCGAGACACTGATTTatgaagaaataaatgcttaaaatagatcactctgcgtGTAACAcatctttatattatataagtttcacatttggaactgaattactgaaataaagtaacttttcaatgataatcaacatttttaaagatgCATTAGTATAATAGGGATGCAGTTGTACTGGAATAGTGGGTCCAATGGCAATATCCAATAATCTTCATTCATTGCAGCGCCGTGTCAGAAACCTCTAAACTGAATTTCTGTTTCTGCATATTtgcataaattaatataatagaaGGACAACTCaagcaaacatattttttactcttttttgtcTTATTAAAGGAAATTTGTTTAGCCAATATCAgctttccctttttttaaaacatgattgCCACCTAGGATCAATTAAactacatccatccatccagccactATTACTCTCACTCCTGTTGAatctatcaatatatatataagaatatacagctctggaaaaaattaagaccactccagtttctgaatcagtttttatgattttgctatttataggtttttgtttgattaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaatatttagagcatttatttgcaggaaatgagaaatggcttaaataacaaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaagaagttcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189223 True 726 lncRNA 0.30 2 8022383 8035973

Neighbor

gene id symbol gene type direction distance location
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 7758 7948922 ~ 8014625 (+)
carmil3 carmil3,lrrc16b coding upstream 110612 7741723 ~ 7911771 (+)
LOC103026570 NA coding upstream 293069 7721740 ~ 7729314 (+)
LOC103026260 NA coding upstream 305134 7709316 ~ 7717249 (+)
LOC111194231 NA coding upstream 315841 7698361 ~ 7706542 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding downstream 96313 8132286 ~ 8509323 (+)
LOC111194298 NA coding downstream 535860 8571833 ~ 8573911 (+)
LOC103021839 NA coding downstream 987124 9023097 ~ 9025014 (+)
LOC111194194 NA coding downstream 1083195 9119168 ~ 9125820 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 1404719 9440692 ~ 9447133 (+)
G139781 NA non-coding upstream 1450 8020446 ~ 8020933 (+)
G139720 NA non-coding upstream 40086 7628240 ~ 7982297 (+)
G139750 NA non-coding upstream 453813 7568367 ~ 7568570 (+)
G139747 NA non-coding upstream 482440 7539659 ~ 7539943 (+)
G139738 NA non-coding upstream 515026 7507052 ~ 7507357 (+)
G139778 copb2,LOC107706339,LOC107583113,LOC107738120,LOC107567551,LOC107694662 non-coding downstream 2922 8038895 ~ 8042442 (+)
G139787 LOC108442840 non-coding downstream 25757 8061730 ~ 8065226 (+)
G139792 NA non-coding downstream 61325 8097298 ~ 8097743 (+)
G139798 NA non-coding downstream 86066 8122039 ~ 8123343 (+)
LOC111194297 NA non-coding downstream 476982 8512955 ~ 8514756 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 976085 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 1280314 6718238 ~ 6742069 (+)
G139282 NA other upstream 1754996 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 1779812 6235434 ~ 6242571 (+)
G139268 NA other upstream 1858219 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 1125360 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 1184301 9220274 ~ 9223981 (+)
G140062 NA other downstream 1503802 9539775 ~ 9540810 (+)
G140103 NA other downstream 1707725 9743698 ~ 9745355 (+)
G140258 NA other downstream 1953945 9989918 ~ 9990296 (+)

Expression


Co-expression Network