G139787 (LOC108442840)


Basic Information

Item Value
gene id G139787
gene name LOC108442840
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8061730 ~ 8065226 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189228
tttttattttgtggtttctttattgatataaattgccaatacagttattttacatttatcatttttttagtgAGCACAGAGAGTGAACACTAACCCTGTTTCTTGAACACTTGATGACAAACAACATCTTCACAGTACAGCTCCAAGTGCAGTTTATCTCCCTCTAGCCAGTGCTTCCATCCACGGTTGGCCTTCTCACCCTTTTGTATACACACCAATTCCTCGCCCTCCCAGGTGATCAGAGTCTTCACCACCCTGTTGTCAAGTCCTTTAGTGTACTCCTCGACCTCCTCGCCGATAGTGAAGCTCATCTCGTAATTCCTGAAGGTGCTGAGGGTCTTAATCGTGAACTTGTCTCCATCCTGGATAATGACCTTGGTTTGAGACAGGAGGAGGGCGATCTTGCGCGTGGCGAAATCAATGCCTGTTGAAAAGAAGGCGACAcgtttattttcataaagttttaagagtccagaaatcaatatttggtgcaataaccctggttttcatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataacattatgtaagtcactcctggtgcaaacaaaccaagcagttcagtttggtttgatggcttgtgatggtccaccttcctcttgattatattccagaggttttcaatttggttaaataaaaaaaaaaaaaaagaaattcatcatttttaagtggtatcttcttttttccagagctgtataactgtACTCCTATTTTCCAACTGCAATCAGCATGCTGTCCTGTCCTGTTTACAGGAAATAAATCACCATCCAAGTCTTTACAGGCTTACCCAGAACTTTCATAAAGTCGTCAAAGTTCTGGTTCGTCTCCAGCACCCATCTCCCATTGAGGTCTACAGGCATGGTGCTCTCAGTGATGGACTTTGGGCTGAAGCACTGTGTCAGGAGAGGAGGGTTCGT

Function

NR:

description
PREDICTED: retinol-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189228 True 957 lncRNA 0.42 3 8061730 8065226

Neighbor

gene id symbol gene type direction distance location
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 47105 7948922 ~ 8014625 (+)
carmil3 carmil3,lrrc16b coding upstream 149959 7741723 ~ 7911771 (+)
LOC103026570 NA coding upstream 332416 7721740 ~ 7729314 (+)
LOC103026260 NA coding upstream 344481 7709316 ~ 7717249 (+)
LOC111194231 NA coding upstream 355188 7698361 ~ 7706542 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding downstream 67060 8132286 ~ 8509323 (+)
LOC111194298 NA coding downstream 506607 8571833 ~ 8573911 (+)
LOC103021839 NA coding downstream 957871 9023097 ~ 9025014 (+)
LOC111194194 NA coding downstream 1053942 9119168 ~ 9125820 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 1375466 9440692 ~ 9447133 (+)
G139778 copb2,LOC107706339,LOC107583113,LOC107738120,LOC107567551,LOC107694662 non-coding upstream 19288 8038895 ~ 8042442 (+)
G139782 NA non-coding upstream 25757 8022383 ~ 8035973 (+)
G139781 NA non-coding upstream 40797 8020446 ~ 8020933 (+)
G139720 NA non-coding upstream 79433 7628240 ~ 7982297 (+)
G139750 NA non-coding upstream 493160 7568367 ~ 7568570 (+)
G139792 NA non-coding downstream 32072 8097298 ~ 8097743 (+)
G139798 NA non-coding downstream 56813 8122039 ~ 8123343 (+)
LOC111194297 NA non-coding downstream 447729 8512955 ~ 8514756 (+)
G139902 NA non-coding downstream 479081 8544307 ~ 8544731 (+)
G139903 NA non-coding downstream 479545 8544771 ~ 8545029 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 1015432 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 1319661 6718238 ~ 6742069 (+)
G139282 NA other upstream 1794343 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 1819159 6235434 ~ 6242571 (+)
G139268 NA other upstream 1897566 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 1096107 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 1155048 9220274 ~ 9223981 (+)
G140062 NA other downstream 1474549 9539775 ~ 9540810 (+)
G140103 NA other downstream 1678472 9743698 ~ 9745355 (+)
G140258 NA other downstream 1924692 9989918 ~ 9990296 (+)

Expression


Co-expression Network