Gene
RNA
| Item | Value |
|---|---|
| gene id | G41008 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 978823 ~ 1008004 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU46551 | True | 1179 | lncRNA | 0.39 | 2 | 978823 | 1008004 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_00946696_00969588 | GFPT2 | coding | upstream | 7665 | 946696 ~ 971158 (+) |
| CI01000006_00926597_00930448 | KIAA1191 | coding | upstream | 47622 | 926285 ~ 931201 (+) |
| CI01000006_00812192_00902946 | ADAMTS2 | coding | upstream | 75719 | 812192 ~ 903104 (+) |
| CI01000006_00800935_00809574 | NA | coding | upstream | 168541 | 799319 ~ 810282 (+) |
| CI01000006_00766356_00790875 | CNOT6, CNOT6A | coding | upstream | 187668 | 765966 ~ 791155 (+) |
| CI01000006_01032572_01040625 | CLK4B | coding | downstream | 24568 | 1032572 ~ 1041142 (+) |
| CI01000006_01139490_01142592 | NA | coding | downstream | 130951 | 1138955 ~ 1142825 (+) |
| CI01000006_01149220_01154850 | MAT2B | coding | downstream | 141037 | 1149041 ~ 1155314 (+) |
| CI01000006_01158519_01160763 | NA | coding | downstream | 149725 | 1157729 ~ 1161006 (+) |
| CI01000006_01525438_01530330 | NA | coding | downstream | 517434 | 1525438 ~ 1530375 (+) |
| G41013 | NA | non-coding | upstream | 4355 | 974176 ~ 974468 (+) |
| G40919 | NA | non-coding | upstream | 72754 | 904785 ~ 906069 (+) |
| G40925 | NA | non-coding | upstream | 192495 | 723821 ~ 786328 (+) |
| G40935 | NA | non-coding | upstream | 263173 | 714904 ~ 715650 (+) |
| CI01000006_00666971_00667988 | NA | non-coding | upstream | 310418 | 666793 ~ 668405 (+) |
| G40987 | NA | non-coding | downstream | 15382 | 1023386 ~ 1027790 (+) |
| G40998 | NA | non-coding | downstream | 20704 | 1028708 ~ 1031192 (+) |
| G41028 | NA | non-coding | downstream | 176061 | 1184065 ~ 1185743 (+) |
| G41045 | NA | non-coding | downstream | 214086 | 1222090 ~ 1223864 (+) |
| G41056 | NA | non-coding | downstream | 242401 | 1250405 ~ 1253695 (+) |
| G40768 | NA | other | upstream | 485797 | 488407 ~ 493026 (+) |
| G40767 | NA | other | upstream | 495488 | 360009 ~ 484185 (+) |
| G40772 | NA | other | upstream | 499629 | 475465 ~ 479194 (+) |
| G41170 | NA | other | downstream | 684061 | 1692065 ~ 1695821 (+) |
| G41424 | NA | other | downstream | 1637658 | 2645662 ~ 2660570 (+) |
| G41591 | NA | other | downstream | 1828163 | 2836167 ~ 2839421 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | downstream | 2721226 | 3734554 ~ 3736035 (+) |
| G41996 | NA | other | downstream | 4109202 | 5117206 ~ 5124149 (+) |
