G139852 (carmil3)


Basic Information

Item Value
gene id G139852
gene name carmil3
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7846496 ~ 7986768 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189299
gagagagagagagagagatttagaaagagacagtcagtcagtaaagaagaaaatgtgtctcagagaaagagagtttgGTCTGTCCATTCATCCAGTCAACCATCTCTTCTCTCATCCTGTATCTTCCTGCCATCTGTTTTTCCCTGTTTAAAAGAACATCTCCCGCTCATCACAGCGGTCTGGTCATGACGCTTTGCCGTTGCCTGGCTCTGGACTGTGCTGACCAGGAAAATCCAgagatttgtttctttttgggGGAAGCCTGGGTTTTTTCACAGGGGGCTTTGGATCTGATGACCTCTCCAGTTCACCGGGGCTGCCTTGCTCCATGCCTGCTTCACATGAGTGTGCCTTTCGGTTTCTGtgaggttttggaggccctccGTTTGAACTGGGCTCTTCTTCA
>TU189300
TACATCACTTTCAGTAGAAAATAGAGGTCATTTAAAACCAGCAAACTCTCACTCCTCATCCAGTTAAAATGGCAGAAAAAAGGGGTATCAGCTGTGTCGCTATCGTCCGTCGGGACACAGTTGTCCttactacaaaaacaaaaacaaaaaaaaacaataagcttAAAGTTCACGACAGTAATGCTCGGTCAGAGCCGTTACAGAAATGTTACAGAAATGTTACAGAAATATTACGGAGATGAGCCGTTATCCAGTCTGTGATTAGTGCAAAATCAGCTCCGTATCTTCCGTATTTACAAAGATCATCCTTCCGCAGAGTTAAAGGTACAATAAAGGAAAATTTCCAATTCCAAACGTTGATGCAAAGGCATGAAGACTGGATAATACTTCACGGCTGCAGGAATGAGGTACGCGGTGGAGGCTCGCGGCCTGCACGACAGGGACGGATAGATAGATTGAAACACGGACTATTACTGGGGTAATACTGGAGCTTACATCATATTCGGAGTCACAGCAAGCCAGGCAAGCAAGTATACTGTACGGCTTATGGAGTGCAGTGTGGAAATATCGCTTATTGTACCTTTAATGCTTCTATTATTACTCACAGTACCTTTAAGTTAAGCACAAGTCAAGGATTGTCTTAAGATTGAGAGGCAGGACGGGAGAAGTGTACAtagatgagagagaaagagaaagagatctAATAGAATGCTGCAACACTCTCAATAAATTACAGGCAAATCAACCaggtagttgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagaaagaaagaga

Function

symbol description
carmil3 Predicted to be located in cytoplasm and plasma membrane. Is expressed in brain; eye; gut; heart; and spinal cord. Orthologous to human CARMIL3 (capping protein regulator and myosin 1 linker 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189299 False 406 lncRNA 0.49 4 7907784 7986768
TU189300 True 809 lncRNA 0.42 2 7846496 7911735

Neighbor

gene id symbol gene type direction distance location
prmt5 prmt5,LOC107694666,LOC107558089,LOC107668985 coding downstream 692605 7134726 ~ 7153891 (-)
LOC103044995 slc7a8a,LOC102238406,LOC107668787,LOC107753926,LOC103388347,LOC103475980,LOC108245892,LOC107377273 coding downstream 723737 7088631 ~ 7122759 (-)
LOC103044685 LOC108438930,LOC107738128,LOC107591391,LOC105021476,LOC106569429 coding downstream 764122 7046380 ~ 7082374 (-)
LOC103044081 NA coding downstream 806047 7034764 ~ 7040449 (-)
LOC103043766 NA coding downstream 813541 7029696 ~ 7032955 (-)
LOC103046059 NA coding upstream 44255 8031023 ~ 8037392 (-)
copb2 copb2,LOC107706339,LOC107567551,LOC107694662,LOC107583113,LOC107738120 coding upstream 52094 8038862 ~ 8060230 (-)
LOC103046363 LOC108442840 coding upstream 74962 8061730 ~ 8065229 (-)
rbp1 rbp1,LOC108442846 coding upstream 95148 8081916 ~ 8093129 (-)
nmnat3 nmnat3 coding upstream 111086 8097854 ~ 8123480 (-)
G139847 NA non-coding downstream 103134 7742978 ~ 7743362 (-)
G139840 NA non-coding downstream 119169 7705345 ~ 7727327 (-)
G139834 NA non-coding downstream 172755 7673411 ~ 7673741 (-)
G139826 NA non-coding downstream 186370 7657617 ~ 7660126 (-)
G139823 NA non-coding downstream 308308 7537969 ~ 7538188 (-)
G139876 NA non-coding upstream 110199 8096967 ~ 8097748 (-)
G139891 NA non-coding upstream 234773 8221541 ~ 8247462 (-)
G139900 NA non-coding upstream 522263 8509031 ~ 8512618 (-)
G139924 NA non-coding upstream 678670 8665438 ~ 8668424 (-)
G139922 NA non-coding upstream 682572 8669340 ~ 8670612 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 663713 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 902362 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 1156773 6564903 ~ 6689723 (-)
G139587 NA other downstream 1416177 6417385 ~ 6430319 (-)
G139487 NA other downstream 1471787 6304969 ~ 6374709 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 684256 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 1710387 9697155 ~ 9714037 (-)
G140342 NA other upstream 2048635 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 2324329 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 2524321 10511089 ~ 10514807 (-)

Expression


Co-expression Network