G139876


Basic Information

Item Value
gene id G139876
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8096967 ~ 8097748 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189328
tttggtacttttggcagtgtggggaGTGTgacaaatcctgctggaaaatgaaatccgcatctcctttataaaagcagagagaagcattaagtgttgtaagattttccgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacagacatgtctctccaaaccatcactgaccatcagtaaatttttgtatttcatttgtaaatcaagagaccagagtctggagtctagtgtgaagttaGTAATCCACAaatagtgatggtttggagagacatgtcatctgcggatttcattttccagcaggacttggcagcacactgccaaaagtaccaattggtcttaaattagattttaattttctgagacactgatttttgggttttcattggttgtaagccataataatcatcaaacaataaaagaaagaaacatttaaaatagattattctctgtgtttaatacatctatataatgtgtgagtttcacattttcaactgaattactgaaataaatgaaatacattcttttgagatgcacctgtattttgTGATTGTGCACACtattctgtttttaatcactAGATACAAGTACCAGAGtatcatgtttattttcttaGAAACAAATCACATTGCACTTTTGCACATTCTGGCATATTCATAATGAGATGTTCATATAATACAAAGGGAATCCAATATTTTCATATGTTGTGGagacaatacaatatataataaagacAATAAGTGTTGCAAAAAA
>TU189329
tttggtacttttggcagtgtggggaGTGTgacaaatcctgctggaaaatgaaatccgcatctcctttataaaagcagagagaagcattaagtgttgtaagattttccgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacagacatgtctctccaaaccatcactgaccatcagtaaatttttgtatttcatttgtaaatcaagagaccagagtctggagtctagtgtgaagttaGTAATCCACAaatagtgatggtttggagagacatgtcatctgcggatttcattttccagcaggacttggcagcacactgccaaaagtaccaattggtcttaaattagattttaattttctgagacactgatttttgggttttcattggttgtaagc
>TU189330
ggaaaatgaaatccgcatctcctttataaaagcagagagaagcattaagtgttgtaagattttccgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacagacatgtctctccaaaccatcactgaccatcagtaaatttttgtatttcatttgtaaatcaagagaccagagtctggagtctagtgtgaagttaGTAATCCACAaatagtgatggtttggagagacatgtcatctgcggatttcattttccagcaggacttggcagcacactgccaaaagtaccaattggtcttaaattagattttaattttctgagacactgatttttgggttttcattggttgtaagc

Function

GO: NA

KEGG:

id description
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU189328 True 782 lncRNA 0.33 1 8096967 8097748
TU189329 False 426 lncRNA 0.39 1 8097323 8097748
TU189330 False 384 lncRNA 0.38 1 8097323 8097706

Neighbor

gene id symbol gene type direction distance location
rbp1 rbp1,LOC108442846 coding downstream 3838 8081916 ~ 8093129 (-)
LOC103046363 LOC108442840 coding downstream 31738 8061730 ~ 8065229 (-)
copb2 copb2,LOC107706339,LOC107567551,LOC107694662,LOC107583113,LOC107738120 coding downstream 36737 8038862 ~ 8060230 (-)
LOC103046059 NA coding downstream 59575 8031023 ~ 8037392 (-)
prmt5 prmt5,LOC107694666,LOC107558089,LOC107668985 coding downstream 943076 7134726 ~ 7153891 (-)
nmnat3 nmnat3 coding upstream 106 8097854 ~ 8123480 (-)
LOC103021520 spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810 coding upstream 447742 8545490 ~ 8625989 (-)
LOC103022255 epha4,epha4a,LOC108440631,LOC107583108,LOC107668967,LOC107706332 coding upstream 888725 8986473 ~ 9067576 (-)
LOC103031272 NA coding upstream 1041046 9138794 ~ 9141090 (-)
LOC103042138 puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443 coding upstream 1435075 9532823 ~ 9563587 (-)
G139856 NA non-coding downstream 104389 7927095 ~ 7992578 (-)
G139852 carmil3 non-coding downstream 110199 7846496 ~ 7986768 (-)
G139855 NA non-coding downstream 192153 7902073 ~ 7904814 (-)
G139847 NA non-coding downstream 353605 7742978 ~ 7743362 (-)
G139840 NA non-coding downstream 369640 7705345 ~ 7727327 (-)
G139891 NA non-coding upstream 123793 8221541 ~ 8247462 (-)
G139900 NA non-coding upstream 411283 8509031 ~ 8512618 (-)
G139924 NA non-coding upstream 567690 8665438 ~ 8668424 (-)
G139922 NA non-coding upstream 571592 8669340 ~ 8670612 (-)
G139941 NA non-coding upstream 647885 8745633 ~ 8749092 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 914184 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 1152833 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 1407244 6564903 ~ 6689723 (-)
G139587 NA other downstream 1666648 6417385 ~ 6430319 (-)
G139487 NA other downstream 1722258 6304969 ~ 6374709 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 573276 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 1599407 9697155 ~ 9714037 (-)
G140342 NA other upstream 1937655 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 2213349 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 2413341 10511089 ~ 10514807 (-)

Expression


Co-expression Network