G139922


Basic Information

Item Value
gene id G139922
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8669340 ~ 8670612 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189384
ATGTCAGGGTTATAATGCAGGAATACAATAGGCTTGTATCTCCTGAAGCTTGTACTAACCCACTACTAAGTCTGTACACACAGAATGGGTGAGCGGTTGCTtcctatatataatatataatatatatatgtatatacacactagtgcatcttttattgttgatgattattatggcttacagccaaatgaaaacccaaaattcaggatctcagaaaaaaattagaatatcagataagaccaattggtacttttggcatgcagtgtgggcagtattaaaagtcctgctggaaaatgaaatccgcgtctccataaaagttgtccgCAAAGAAaacgctgcactgactttggatttTGGACTTGGTAtatcacagtggatcaacaccagcagatgacatgtctctccaaaccatcactgatcccctctgctgacaacttttatgaagatgcggatttcattttccagcaggacttggcacactgcccacacttccaaaTGCACCAATGAAAAATGGCCAGAAAGAATATTCAAATTTtcggagacactgatttttgggttttcattgcctgtaagcttcataatcatcaacaataaaagaaataaactattaaaacagatcactctgcgttaaatacatttatagaatacatgagcttcacattttgaactgaattacagaaaaaaaaaattcaatgatattctaattgtttgagatgcactagtatgtatatatatataaatataaatatatctccCACATGTTTTCAAGCAAAAACCTTTTTGTACcctgacttctattgaaagataacccaaaagaacccaaagagtcacagaccctttaaaagctgtgtcgCTTATTAAACATCTTAAGAGCATCACTCCAAAATGGTGTGAGAATCTGTGCTTCGTTTATCTCTTGATAAATTTTAAATGCATGTATGACATGATTCTACGGGTCTTTTCCCACCATTTAACCATTCAGAATTatcttaaataaatgttttccgTTCCATAAAACTAGTTCTGACCTGATTTTTAGAACAAAATGCTAATAATAGGAAATTATGTCATGTCATTTATATTACttcaaaaagaaacaaaaataaatgatctgCTCGCTGAATTTATCTTATTCAATTTTGAAATTGGTATCAAATGAtcagaaatgggtctgggctcttatgggttaataATAATATGGGTTCATTCCTTCTGCTATAAAAGTATCTGCTTTTCATTAAGGTTAGACAAGGTTTTTGCTTGATAGCactgata

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko05032 Morphine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU189384 True 1273 lncRNA 0.34 1 8669340 8670612

Neighbor

gene id symbol gene type direction distance location
LOC103021520 spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810 coding downstream 43351 8545490 ~ 8625989 (-)
nmnat3 nmnat3 coding downstream 545860 8097854 ~ 8123480 (-)
rbp1 rbp1,LOC108442846 coding downstream 576211 8081916 ~ 8093129 (-)
LOC103046363 LOC108442840 coding downstream 604111 8061730 ~ 8065229 (-)
copb2 copb2,LOC107706339,LOC107567551,LOC107694662,LOC107583113,LOC107738120 coding downstream 609110 8038862 ~ 8060230 (-)
LOC103022255 epha4,epha4a,LOC108440631,LOC107583108,LOC107668967,LOC107706332 coding upstream 315861 8986473 ~ 9067576 (-)
LOC103031272 NA coding upstream 468182 9138794 ~ 9141090 (-)
LOC103042138 puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443 coding upstream 862211 9532823 ~ 9563587 (-)
LOC103042459 nrbp2a,nrbp2,LOC108413492,LOC108267406,LOC107733885,LOC107599881,LOC107657444 coding upstream 903728 9574340 ~ 9672214 (-)
bfsp2 bfsp2 coding upstream 1082052 9752664 ~ 9761502 (-)
G139924 NA non-coding downstream 916 8665438 ~ 8668424 (-)
G139900 NA non-coding downstream 156722 8509031 ~ 8512618 (-)
G139891 NA non-coding downstream 421878 8221541 ~ 8247462 (-)
G139876 NA non-coding downstream 571592 8096967 ~ 8097748 (-)
G139856 NA non-coding downstream 676762 7927095 ~ 7992578 (-)
G139941 NA non-coding upstream 75021 8745633 ~ 8749092 (-)
G139951 NA non-coding upstream 116348 8786960 ~ 8787401 (-)
G139967 NA non-coding upstream 289822 8960434 ~ 9036120 (-)
G139977 NA non-coding upstream 425345 9095957 ~ 9096164 (-)
G139994 NA non-coding upstream 505711 9176323 ~ 9182395 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 1486557 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 1725206 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 1979617 6564903 ~ 6689723 (-)
G139587 NA other downstream 2239021 6417385 ~ 6430319 (-)
G139487 NA other downstream 2294631 6304969 ~ 6374709 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 412 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 1026543 9697155 ~ 9714037 (-)
G140342 NA other upstream 1364791 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 1640485 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 1840477 10511089 ~ 10514807 (-)

Expression


Co-expression Network