LOC103030954


Basic Information

Item Value
gene id LOC103030954
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9161333 ~ 9162523 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189488
GGAAACTTGACTTGTGTTTGTTCCGCTGAAGCTGGAGGGGTGGGCTTAAATAGGCCACATTTCAGTGTTAAAGAAGTGGAGACCACTAGAGCTAGAGCTAGAGTGAAGAGTAGGGTAAAAAGATGAAGATGCCACTCGTTCTTCACTGCTcagctgctgttctgctgttagTGATGTTTTATTCGCCTGAAAAACAAGgtagCGAAGCTCGTGCCGTGACTTGCTGTCTGGAAACATCGAAAACCATGTTACGTCTTGATTTGCTGAAAGGATACAAGGAACAGAAGACCTTCTTATGTCCTGTGCATGCTATAATAtttaccaccaagaagaacatCAACATCTGCTCTGATCCCACCGCACCATGGACCCTCAGAGCCAAGAAGTTCTTGGACAAGAAGAAACAGCCTCCAGTGAAGCCCAAAGATCTTCCACACCATAATCCCACCAGAGCTCTGAAACCTGAAGCACGGGCGCAGAGTAACAGCACGACCACCGTTAACGAAACATCAGTGTTTGTGTGATATGATTCGATTTGACTTGATATGAACATTGATTTTGAACCATTTTCTCTTTACATATTATATGACAAAAGGATTTGTAAATATGCTCTTTATTAAAGCAGATATTTGAggtaatattttacttttaacttttaattcaattgtatttaatagacatgcagttgaacaTTAGTTGAATGTCGGTTGAGCATCAATGTTGAAGCCAGCAAATGGACCTTTCAAGTAAAGTGTTGCCAaatttttgtgttattattattattatgtatttttgttaattaactTTTGTACAGTGAAAGgaatgaaatattattttatctaaaaaacaaataa
>XM_007241079.3
GAAGTGGAGACCACTAGAGCTAGAGCTAGAGTGAAGAGTAGGGTAAAAAGATGAAGATGCCACTCGTTCTTCACTGCTcagctgctgttctgctgttagTGATGTTTTATTCGCCTGAAAAACAAGgtagCGAAGCTCGTGCCGTGACTTGCTGTCTGGAAACATCGAAAACCATGTTACGTCTTGATTTGCTGAAAGGATACAAGGAACAGAAGACCTTCTTATGTCCTGTGCATGCTATAATAtttaccaccaagaagaacatCAACATCTGCTCTGATCCCACCGCACCATGGACCCTCAGAGCCAAGAAGTTCTTGGACAAGAAGAAACAGCCTCCAGTGAAGCCCAAAGATCTTCCACACCATAATCCCACCAGAGCTCTGAAACCTGAAGCACGGGCGCAGAGTAACAGCACGACCACCGTTAACGAAACATCAGTGTTTGTGTGATATGATTCGATTTGACTTGATATGAACATTGATTTTGAACCATTTTCTCTTTACATATTATATGACAAAAGGATTTGTAAATATGCTCTTTATTAAAGCAGATATTTGAggtaatattttacttttaacttttaattcaattgtatttaatagacatgcagttgaacaTTAGTTGAATGTCGGTTGAGCATCAATGTTGAAGCCAGCAAATGGACCTTTCAAGTAAAGTGTTGCCAaatttttgtgttattattattattatgtatttttgttaattaactTTTGTACAGTGAAAGgaatgaaatattattttatctaaaaaacaaataataaaggacacattttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189488 True 854 TUCP 0.38 3 9161333 9162505
XM_007241079.3 False 800 mRNA 0.37 3 9161405 9162523

Neighbor

gene id symbol gene type direction distance location
LOC111194194 NA coding upstream 35513 9119168 ~ 9125820 (+)
LOC103021839 NA coding upstream 136319 9023097 ~ 9025014 (+)
LOC111194298 NA coding upstream 587422 8571833 ~ 8573911 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding upstream 652010 8132286 ~ 8509323 (+)
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 1146708 7948922 ~ 8014625 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 278169 9440692 ~ 9447133 (+)
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding downstream 551040 9713563 ~ 9740992 (+)
LOC103039200 zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800 coding downstream 620206 9782729 ~ 9794211 (+)
LOC103038676 NA coding downstream 648059 9810582 ~ 9812214 (+)
fam217a NA coding downstream 667379 9829902 ~ 9847321 (+)
G139958 NA non-coding upstream 177615 8960530 ~ 8983718 (+)
G139954 NA non-coding upstream 344475 8816362 ~ 8816858 (+)
G139952 NA non-coding upstream 367126 8793861 ~ 8794207 (+)
G139903 NA non-coding upstream 616304 8544771 ~ 8545029 (+)
G139902 NA non-coding upstream 616602 8544307 ~ 8544731 (+)
G140006 NA non-coding downstream 63450 9225973 ~ 9226183 (+)
G140008 NA non-coding downstream 275703 9438226 ~ 9439147 (+)
G140012 NA non-coding downstream 276910 9439433 ~ 9440213 (+)
LOC111194300 NA non-coding downstream 284611 9447134 ~ 9452566 (+)
G140042 NA non-coding downstream 311293 9473816 ~ 9502247 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 2115035 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 2419264 6718238 ~ 6742069 (+)
G139282 NA other upstream 2893946 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 2918762 6235434 ~ 6242571 (+)
G139268 NA other upstream 2997169 6159720 ~ 6164164 (+)
LOC103030224 NA other downstream 57751 9220274 ~ 9223981 (+)
G140062 NA other downstream 377252 9539775 ~ 9540810 (+)
G140103 NA other downstream 581175 9743698 ~ 9745355 (+)
G140258 NA other downstream 827395 9989918 ~ 9990296 (+)
G140262 NA other downstream 831063 9993586 ~ 9994066 (+)

Expression


Co-expression Network