LOC103030224


Basic Information

Item Value
gene id LOC103030224
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9220274 ~ 9223981 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189503
ACCAGCGACAACCGAACGTACAACGAGCCCAAAGGCTACAACTCCCGCTGTACCAACTGCAAAGCTGCCAACATCAACGGAAAATCAAATGCCAAAAGGAACACCAACGATTACAATCAATCAAACCACCAAATCAACCCATGACCTGCCAATTCCAACAACAAGAACAACATCCATCACCCAATCACCATCAACTACAGAAGAATCTGCACCATCAACAACCATCCCCCCACAGCAACAGACGACAACGCCAAGGACCACAAAGATGACGTCTTCTGAGGCACCAGTGACCACCCAACCACTGCAGTTTGAAAGTACTGCTAGCACAGTCATCACGACTACTACCCTCACCACGAGCACTGTAACAACTGCAGGACCTCAACAGACCACCAGTCCACCAGTCCAGCAGACAGACTCAACTGCGGTCAACATACCAACAACCCATCGACATCCAACAAGGACGTTGACTAAAGAGCAACAAAATCCAATCTTCCACAAGGAGCCATGGACAGACAGACgactgaagaagaaaaaaaggtctGGACTAA
>XM_022677671.1
TTATTGTTATGAAAGTCAGAGAAACATTGaaacagtgtcctgtggctAGTGTCCTGTGTGCAGAGTCCTGTGGACAGAGTCCTGTGGTCAAGATCCTAAAGGGCGGTATCCTGTGAAGGTAGCATCCTCTGGGCAGGATCCATTGGGAGGAGTCCTGTGGACCGCGTCCTGTAGTTAGCGTACTGTCGGCAGCGTCCCACTACAGAGAGTACAGAACACAGGAGGACAAGATGCTGCACACTCTGCTCCTTTACCTGCTCTTCGCCATGAAGTGGATGACCGTCGAGTTAGTGGacTATGGGCCTCCACGATCATGCTGCCGAGCAACTTCAACCAAAACAGTTCCTGTAGAAAATATTGTGAAATTTTCTTATCAAGTCGGATGCCATGTTGAAGcgattaaattTCTCACCAAAATGGGCAATTATATATGCTCTGATCCGGAAAGTGCTTGGGCCAAAGAGACTATAGACCAGTTGACAAGGAAACCCCCCATTTTACCACTACCACCCACTTGGACCACTCCCTCTACAACAACACCAACAACACCAGCGACAACCGAACGTACAACGAGCCCAAAGGCTACAACTCCCGCTGTACCAACTGCAAAGCTGCCAACATCAACGGAAAATCAAATGCCAAAAGGAACACCAACGATTACAATCAATCAAACCACCAAATCAACCCATGACCTGCCAATTCCAACAACAAGAACAACATCCATCACCCAATCACCATCAACTACAGAAGAATCTGCACCATCAACAACCATCCCCCCACAGCAACAGACGACAACGCCAAGGACCACAAAGATGACGTCTTCTGAGGCACCAGTGACCACCCAACCACTGCAGTTTGAAAGTACTGCTAGCACAGTCATCACGACTACTACCCTCACCACGAGCACTGTAACAACTGCAGGACCTCAACAGACCACCAGTCCACCAGTCCAGCAGACAGACTCAACTGCGGTCAACATACCAACAACCCATCGACATCCAACAAGGACGTTGACTAAAGAGCAACAAAATCCAATCTTCCACAAGGAGCCATGGACAGACAGACgactgaagaagaaaaaaaggtctGGACTAAGGAAAGCACAGAGGAAATTGAGTGGCTAGACCAGAACCAATAGAAGACTTTGACTTTCAATTCTCTGGACACTATCTAAAGTCAGCCACCTACTCTTCTCTTTCACAACTGTAACCAGTGCTGCACCAGAGAAAAGCGCTGGATCCTTCACTCCAGTTCATCTGCCAAGAGATGCATGTGCTATCCATCAACACAGTGGAGGTAACAaggggaagagagcgccatctacccaccaagagagagcaaagccattTACTGTAAGTCTGCTCTCTCGGGCTCTGGCTGCCGATGGCGAAACTGCTTGAGCCAGCATTCGAACTAGAGAGCCTCAGGCCAGGTCTTAATTTGTTATGTCGTAATTGATACTAATTTGAAACAATACTGTAAGttattacatataaataactaataataatttctttAGTAGTGCTATTAAACAATTAGTTGCAACATTCTATCCTAAGTATAGTTAATTAATGTACTCTTATTATAAAGTCTTTCTGTGCCGTCGTttttaatgccttaaaaatgtaatgtatttgtaAATCTAAAGTAGTGTTTTCAAAAGCTGATCCTTGTTATCCTATTTTAACCACACCCCCTTTAACCACACTTCTCACTTCTGAAAGGGGCTGTTAACCAGATCTTTGGTTTATAGTTTAACCCTTTCAATCCTGAGTTATGTTAAATGCACTCAAATAAAATGCACTCAAAAGAACAAAGTAATATAACTCTAATATAAAACCCAGTTGAATCCAATTaactattttataaataataaattaattgagaCCCCATCAGATTAGCGCATGAATCAACCAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189503 False 548 TUCP 0.48 1 9222609 9223156
XM_022677671.1 True 1920 mRNA 0.43 4 9220274 9223981

Neighbor

gene id symbol gene type direction distance location
LOC111194194 NA coding upstream 94454 9119168 ~ 9125820 (+)
LOC103021839 NA coding upstream 195260 9023097 ~ 9025014 (+)
LOC111194298 NA coding upstream 646363 8571833 ~ 8573911 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding upstream 710951 8132286 ~ 8509323 (+)
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 1205649 7948922 ~ 8014625 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 216711 9440692 ~ 9447133 (+)
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding downstream 489582 9713563 ~ 9740992 (+)
LOC103039200 zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800 coding downstream 558748 9782729 ~ 9794211 (+)
LOC103038676 NA coding downstream 586601 9810582 ~ 9812214 (+)
fam217a NA coding downstream 605921 9829902 ~ 9847321 (+)
G139958 NA non-coding upstream 236556 8960530 ~ 8983718 (+)
G139954 NA non-coding upstream 403416 8816362 ~ 8816858 (+)
G139952 NA non-coding upstream 426067 8793861 ~ 8794207 (+)
G139903 NA non-coding upstream 675245 8544771 ~ 8545029 (+)
G139902 NA non-coding upstream 675543 8544307 ~ 8544731 (+)
G140006 NA non-coding downstream 1992 9225973 ~ 9226183 (+)
G140008 NA non-coding downstream 214245 9438226 ~ 9439147 (+)
G140012 NA non-coding downstream 215452 9439433 ~ 9440213 (+)
LOC111194300 NA non-coding downstream 223153 9447134 ~ 9452566 (+)
G140042 NA non-coding downstream 249835 9473816 ~ 9502247 (+)
LOC103030954 NA other upstream 57751 9161333 ~ 9162523 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 2173976 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 2478205 6718238 ~ 6742069 (+)
G139282 NA other upstream 2952887 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 2977703 6235434 ~ 6242571 (+)
G140062 NA other downstream 315794 9539775 ~ 9540810 (+)
G140103 NA other downstream 519717 9743698 ~ 9745355 (+)
G140258 NA other downstream 765937 9989918 ~ 9990296 (+)
G140262 NA other downstream 769605 9993586 ~ 9994066 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 1087119 10311100 ~ 10345471 (+)

Expression


Co-expression Network