G140012


Basic Information

Item Value
gene id G140012
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9439433 ~ 9440213 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189517
ACGACAAACACACAAACGCAAAATGCGAAATGCAAAATGCCATTGTACCATAGTGTAAAAAGGAGTGTACAgcattgattattgattatgatTGAACAAACATAAAAAGGGACCTATAGAATGTTTGTAAGGATGTACTTATATTTAGTtttgggagagaaaaagaaaagaaaagaaaagaaaagaaaagaaaaagaagaagacgcGAGGCGTAGCGATCAGCGGACTGGGGGACGGGGACGATAGCCGAAACTCTGGAATGTAGCATGGATGCTAACGCTTTGTCGTCGATTGACAAGTATGAGAGCGACTGCAGTTCTTTCTTATTCACTCAAGTGGTGGCTGTAGCTGCTTGACTTTAGATGCCTTATTAACTGTGCTGTTTCTTtcccttcttctcttctcttctcttcttcccgGTAGAGGCAGTATCATGAGATGTTGATGTACATAGTATTTATCATGGCGTCACTTGAAGACTCTTGCTCCGTAGTAAAGCCTGGCTCCACACGCTTCCCCCGTTTGCGCGaggtcgttttttttttatttattattatttttttcttcgtttttttgAAAACCACAAGCTTGTGCTGGTGCATGTGGCTTTGGGAAAAAGAGTGATGAATAAAGTGATGAACCTACAAGGCTGAaccaataatacaaaaaaaaagtctcatgCTAATCGCGCTGCAAGTCGACTTACTACACTACTATTTTTCTACCGGTCGTTCTGTACAGTATAGATACAGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189517 True 755 lncRNA 0.40 2 9439433 9440213

Neighbor

gene id symbol gene type direction distance location
LOC111194194 NA coding upstream 313613 9119168 ~ 9125820 (+)
LOC103021839 NA coding upstream 414419 9023097 ~ 9025014 (+)
LOC111194298 NA coding upstream 865522 8571833 ~ 8573911 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding upstream 930110 8132286 ~ 8509323 (+)
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 1424808 7948922 ~ 8014625 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 479 9440692 ~ 9447133 (+)
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding downstream 273350 9713563 ~ 9740992 (+)
LOC103039200 zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800 coding downstream 342516 9782729 ~ 9794211 (+)
LOC103038676 NA coding downstream 370369 9810582 ~ 9812214 (+)
fam217a NA coding downstream 389689 9829902 ~ 9847321 (+)
G140008 NA non-coding upstream 286 9438226 ~ 9439147 (+)
G140006 NA non-coding upstream 213250 9225973 ~ 9226183 (+)
G139958 NA non-coding upstream 455715 8960530 ~ 8983718 (+)
G139954 NA non-coding upstream 622575 8816362 ~ 8816858 (+)
G139952 NA non-coding upstream 645226 8793861 ~ 8794207 (+)
LOC111194300 NA non-coding downstream 6921 9447134 ~ 9452566 (+)
G140042 NA non-coding downstream 33603 9473816 ~ 9502247 (+)
G140050 NA non-coding downstream 45161 9485374 ~ 9489112 (+)
G140057 LOC108413493,LOC108267407,LOC107599879 non-coding downstream 92616 9532829 ~ 9563624 (+)
G140060 NA non-coding downstream 98165 9538378 ~ 9539308 (+)
LOC103030224 NA other upstream 215452 9220274 ~ 9223981 (+)
LOC103030954 NA other upstream 276910 9161333 ~ 9162523 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 2393135 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 2697364 6718238 ~ 6742069 (+)
G139282 NA other upstream 3172046 6266816 ~ 6267387 (+)
G140062 NA other downstream 99562 9539775 ~ 9540810 (+)
G140103 NA other downstream 303485 9743698 ~ 9745355 (+)
G140258 NA other downstream 549705 9989918 ~ 9990296 (+)
G140262 NA other downstream 553373 9993586 ~ 9994066 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 870887 10311100 ~ 10345471 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G382469 NA non-coding CI01000190 null 814962 ~ 818958 (+)
mexican tetra (Astyanax mexicanus) G317584 NA non-coding NW_019172878.1 APWO02000075.1 781143 ~ 781662 (+)