G140050


Basic Information

Item Value
gene id G140050
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9485374 ~ 9489112 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189567
aaccctattgtttttgctaagatttttcttcttcttattattattattattattattattattattattattattctttttctcctgtaaaaacagttgtgcagcctaaaccgtaagtcatagagaaatgaaacttggtaggtagatgtaggatcagtgcatctcggtggacaacaaaaatggcaccgattggtcaagtggtggcgctataaacaaggaaattcatttttcacaattttctcaataactcaaaaaccataagacctacattcaaaattctttttttgatggattccttgggtcaataccaacaactttccaatttggaccatgcacttccgtctatatagattttgtgctaatttgcataatatgcaaaacctacttttgcaaactagtcctaggaattttgaccaatcctggcatgtttggtatcaaaaaaactcgtgagagcatgcgcttcaatattcattaagaaaaagttgaaatatgtaaacaatatggccgccatatgcaaattagtccttccggatatatgccccattcacttcaagaggtaaatttggagcactgtttctcagcaaccgtgcaacctagcaagttgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaagggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgatatttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccgcccactggggggcgctgttccaaaaaaaacgagtatatgtcaatcatgctgtactattttgacatctaattgtttttgccatatttagtacagtggctctgacaaatttctcaatacaactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttctaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatcttcaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatattttt
>TU189568
aaccctattgtttttgctaagatttttcttcttcttattattattattattattattattattattattattctttttctcctgtaaaaacagttgtgcagcctaaaccgtaagtcatagagaaatgaaacttggtaggtagatgtaggatcagtgcatctcggtggacaacaaaaatggcaccgattggtcaagtggtggcgctataaacaaggaaattcatttttcacaattttctcaataactcaaaaaccataagacctacattcaaaattctttttttgatggattccttgggtcaataccaacaactttccaatttggaccatgcacttccgtctatatagattttgtgctaatttgcataatatgcaaaacctacttttgcaaactagtcctaggaattttgaccaatcctggcatgtttggtatcaaaaaaactcgtgagagcatgcgcttcaatattcattaagaaaaagttgaaatatgtaaacaatatggccgccatatgcaaattagtccttccggatatatgccccattcacttcaagaggtaaatttggagcactgtttctcagcaaccgtgcaacctagcaagttgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaagggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgatatttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccgcccactggggggcgctgttccaaaaaaaacgagtatatgtcaatcatgctgtactattttgacatctaattgtttttgccatatttagtacagtggctctgacaaatttctcaatacaactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttctaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatcttcaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatattttt
>TU189570
aaccctattgtttttgctaagatttttcttcttcttattattattattattattattattattattattattctttttctcctgtaaaaacagttgtgcagcctaaaccgtaagtcatagagaaatgaaacttggtaggtagatgtaggatcagtgcatctcggtggacaacaaaaatggcaccgattggtcaagtggtggcgctataaacaaggaaattcatttttcacaattttctcaataactcaaaaaccataagacctacattcaaaattctttttttgatggattccttgggtcaataccaacaactttccaatttggaccatgcacttccgtctatatagattttgtgctaatttgcataatatgcaaaacctacttttgcaaactagtcctaggaattttgaccaatcctggcatgtttggtatcaaaaaaactcgtgagagcatgcgcttcaatattcattaagaaaaagttgaaatatgtaaacaatatggccgccatatgcaaattagtccttccggatatatgccccattcacttcaagaggtaaatttggagcactgtttctcagcaaccgtgcaacctagcaagttgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaagggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgatatttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccgcccactggggggcgctgttccaaaaaaaacgagtatatgtcaatcatgctgtactattttgacatctaattgtttttgccatatttagtacagtggctctgacaaatttctcaatacaactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttctaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatcttcaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatattttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189567 True 1892 lncRNA 0.37 3 9485374 9489112
TU189568 False 1889 lncRNA 0.37 3 9485374 9489112
TU189570 False 1889 lncRNA 0.37 3 9485374 9489112

Neighbor

gene id symbol gene type direction distance location
LOC103039571 tmub1,LOC102788489 coding upstream 38241 9440692 ~ 9447133 (+)
LOC111194194 NA coding upstream 359554 9119168 ~ 9125820 (+)
LOC103021839 NA coding upstream 460360 9023097 ~ 9025014 (+)
LOC111194298 NA coding upstream 911463 8571833 ~ 8573911 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding upstream 976051 8132286 ~ 8509323 (+)
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding downstream 224451 9713563 ~ 9740992 (+)
LOC103039200 zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800 coding downstream 293617 9782729 ~ 9794211 (+)
LOC103038676 NA coding downstream 321470 9810582 ~ 9812214 (+)
fam217a NA coding downstream 340790 9829902 ~ 9847321 (+)
LOC103040953 si:dkey-154p10.3,LOC108430290,LOC107736657,LOC108267397,LOC107730804,LOC107701000 coding downstream 372900 9862012 ~ 9876520 (+)
LOC111194300 NA non-coding upstream 32808 9447134 ~ 9452566 (+)
G140012 NA non-coding upstream 45161 9439433 ~ 9440213 (+)
G140008 NA non-coding upstream 46227 9438226 ~ 9439147 (+)
G140006 NA non-coding upstream 259191 9225973 ~ 9226183 (+)
G139958 NA non-coding upstream 501656 8960530 ~ 8983718 (+)
G140057 LOC108413493,LOC108267407,LOC107599879 non-coding downstream 43717 9532829 ~ 9563624 (+)
G140060 NA non-coding downstream 49266 9538378 ~ 9539308 (+)
G140072 NA non-coding downstream 101235 9590347 ~ 9591803 (+)
G140074 nrbp2,LOC108267406,LOC108413492,LOC106597174 non-coding downstream 108361 9597473 ~ 9609161 (+)
G140169 NA non-coding downstream 259584 9748696 ~ 9749098 (+)
LOC103030224 NA other upstream 261393 9220274 ~ 9223981 (+)
LOC103030954 NA other upstream 322851 9161333 ~ 9162523 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 2439076 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 2743305 6718238 ~ 6742069 (+)
G139282 NA other upstream 3217987 6266816 ~ 6267387 (+)
G140062 NA other downstream 50663 9539775 ~ 9540810 (+)
G140103 NA other downstream 254586 9743698 ~ 9745355 (+)
G140258 NA other downstream 500806 9989918 ~ 9990296 (+)
G140262 NA other downstream 504474 9993586 ~ 9994066 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 821988 10311100 ~ 10345471 (+)

Expression


Co-expression Network