LOC103044908 (LOC103045223,LOC108413497,LOC105899383)


Basic Information

Item Value
gene id LOC103044908
gene name LOC103045223,LOC108413497,LOC105899383
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9697155 ~ 9714037 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189726
TACACAGCAGCAGGGCGAACTGAGTAACTTCCTAGATTTATTCTACTGACCCTATCCTACTGAATACTGTGCCGGTTACCCACTTTCACCGGCGGGTTTAGCGAGGGTAGGTAAGAAGTGTGGGAGGGAGGCGCTGACAGCGTTTCTCCGGTCCCTCGTCTCCTTCTTACACAGCCTTCCCACCTCCCACCGCCGCAGCCCTGCTACCTtcgcttagcttagcttatcttagtttagtttagcctagcctagcctagcctggcCGGCAGGTCGGAGGACGGCTGTTACAGTGCCGGCCGGTCGAACAGTTCCCCGCTACCTTCAGTGTGACATCGCAGAGTTTGCCCTGTCTTCGGATTTCCTCCATCACTGAGTACCCGCGGCTCGGTAGATCGTGCACCGAGAAATGCATCAgatcctccagctcctccagcaCCATCTCACCCATCTCCACTCAGCCGAATACCGAAACGCGAAACGGGACAAGAGTGAGCCAGGCGGGACGCCGTAAGGCAGAACCAATAACAACAAGACTGAGCCATGAGCAGAAACTACATGTCTAAGTACGACGAGCTCCGCAAAGGAGACTACCTGTGGTCTAACAACAAGGAGTACAAAGCAGTCTTTCAGGATGATGGCAACTTTGTCATCTTCGGTTGGAGACAGGTGTGGTCATCTGACACAGGAGGAGTGAGGGATGCCCACCGCCTGTGCATGCAGGACGACTGCAACCTGGTTCTGTACAAGAGGGACGACAAGGCATTGTGGCACACCAACACCCACCGGGCAGAGGGCGTCAGGATGTGCCACCTGTACCTGCGCAACGACGGCAACCTGGTGAtcgagagagatggagaggaggTGTGGAACTCTGCTCAGTCCAGGGGGCAGAAGTAAAGGGGTCAATAGCCAAATGCAAAGCCAGCCCGCCTAACAGTCCCACCGACATTAAAGGCCTGAGAGTCTGTTTACAGTGCTGTTCATGTTTCTCAATAAAGCTCAAGT
>XM_007242797.3
ACTGTATGTCAATCAATTGTTTTCCTGGTAACATGCAATCTTCATTCTACATTTGTGATGCGTTTCCAGGCTTTCACtgcagtttttatttgttggtGTTAGGTTTGAGAGGGTACTCCCTTTAGTCTGCTCTTTAGCAGGTAAGAATGCATGCTCTATAGGGTTTAAATGACTATGGGGTTTTGATCCACTTCACAGTGAGTTTTgagtcattatcttgctgcatcCTTATCAGAGCCAATACTTTGGATGTGAGTGGAGTGGAGTGAGTGTCTTATTTAAGTGTCCCATAACATCACAGCCTGTAGCAGCTAAAAACACTCTACAAATGAACCATATGTAAACAAATGTCTGCATTAATTTTTCTGCAGAATCAGAGACAATGGCACTGCGTAAGACTCTGTATGTGATGGTGCGAGGATACAGAAAAACAGTCAAATCTCACAGTTCCCCAAGGGGTGGGGGGTCCAGTTTTACAGCCTTAGTAAAATAGTCAGCAAAACAGCTTAAAGTGATTACTCTCTAATCAATCTGATCTAATAAACACATGAAAGCGTCTGGAATTCCCGCTGAAATTGGAAGCGCACTCGCCCACATCTCAGGTCTCGTGCACTTCCTCAGCCCACCCGGCCATGAAAGGGACACTCAGTGCCAACGACTGCCCTGCCCCTACTCTTCACCTATAAAACAGGTGTGCATTCAGGAGCCCAACTGCAGAGCTACAGCCTTGTCTGTCCGACCCATTGAAAGCCCCAGCTGACCCAGCTTGAGTACTGACCCGTGAGTACTGACCTGCGAGTACTGACCCAAACATGAGCACAAACCACCTGTCCAAGTATGACGAGCTTCGCAAGGGGGACTACCTGTGGTCCAACAACAGGGAGTGGAAGGCTGTGTTCCAGGATGATGGGAACTTTGCCATTTACGGGTGGAGGCAGGTGTGGTCATCTGACACGGGTGGCACGAGGGACGCTCACCGCCTGTGCATGCAGGACGACTGCAACCTGGTCCTGTACAAGCGGGACAACAAGGTGCTGTGGCAGACGAAGAGCCAGGCGTCCGGTGCCTTTAAGGTGTGCCGGCTGTACCTGCGCAACGACGGCAACCTGGTGAttgagagagacggagaggaGGTGTGGAACTCGGCCCAGTCCAAGGGCTACAAGTGAATCGGCCAATCAGAGAGGCTGTGAAGAGTCAAATGACCTCACAGTGACCCCACTACAAAGAGAACATGATAaagataaaacaatataatcaATAAAGTTGAACTGCATGCTCCTAA
>XM_022677965.1
ATCTCCACTCAGCCGAATACCGAAACGCGAAACGGGACAAGAGTGAGCCAGGCGGGACGCCGTAAGGCAGAACCAATAACAACAAGACTGAGCCATGAGCAGAAACTACATGTCTAAGTACGACGAGCTCCGCAAAGGAGACTACCTGTGGTCTAACAACAAGGAGTACAAAGCAGTCTTTCAGGATGATGGCAACTTTGTCATCTTCGGTTGGAGACAGGTGTGGTCATCTGACACAGGAGGAGTGAGGGATGCCCACCGCCTGTGCATGCAGGACGACTGCAACCTGGTTCTGTACAAGAGGGACGACAAGGCATTGTGGCACACCAACACCCACCGGGCAGAGGGCGTCAGGATGTGCCACCTGTACCTGCGCAACGACGGCAACCTGGTGAtcgagagagatggagaggaggTGTGGAACTCTGCTCAGTCCAGGGGGCAGAAGTAAAGGGGTCAATAGCCAAATGCAAAGCCAGCCCGCCTAACAGTCCCACCGACATTAAAGGCCTGAGAGTCTGTTTACAGTGCTGTTCATGTTTCTCAATAAAGCTCAAGTAAAATA
>XM_022677966.1
CTCAGCCGAATACCGAAACGCGAAACGGGACAAGAGTGAGCCAGGCGGGACGCCGTAAGGCAGAACCAATAACAACAAGACTGCTCCAGCCTTGTCTGATCGATCATCTAAAGTCTGAATAGCCTAGCCATGAGCAGAAACTACATGTCTAAGTACGACGAGCTCCGCAAAGGAGACTACCTGTGGTCTAACAACAAGGAGTACAAAGCAGTCTTTCAGGATGATGGCAACTTTGTCATCTTCGGTTGGAGACAGGTGTGGTCATCTGACACAGGAGGAGTGAGGGATGCCCACCGCCTGTGCATGCAGGACGACTGCAACCTGGTTCTGTACAAGAGGGACGACAAGGCATTGTGGCACACCAACACCCACCGGGCAGAGGGCGTCAGGATGTGCCACCTGTACCTGCGCAACGACGGCAACCTGGTGAtcgagagagatggagaggaggTGTGGAACTCTGCTCAGTCCAGGGGGCAGAAGTAAAGGGGTCAATAGCCAAATGCAAAGCCAGCCCGCCTAACAGTCCCACCGACATTAAAGGCCTGAGAGTCTGTTTACAGTGCTGTTCATGTTTCTCAATAAAGCTCAAGTAAAATA
>XM_022677968.1
GCCGAATACCGAAACGCGAAACGGGACAAGAGTGAGCCAGGCGGGACGCCGTAAGGCAGAACCAATAACAACAAGACTGAAACATGAGCACAAACCACCTGTCCAAGTATGACGAGCTTCGCAAGGGGGACTACCTGTGGTCCAACAACAGGGAGTGGAAGGCTGTGTTCCAGGATGATGGGAACTTTGCCATTTACGGGTGGAGGCAGGTGTGGTCATCTGACACGGGTGGCACGAGGGACGCTCACCGCCTGTGCATGCAGGACGACTGCAACCTGGTCCTGTACAAGCGGGACAACAAGGTGCTGTGGCAGACGAAGAGCCAGGCGTCCGGTGCCTTTAAGGTGTGCCGGCTGTACCTGCGCAACGACGGCAACCTGGTGAttgagagagacggagaggaGGTGTGGAACTCGGCCCAGTCCAAGGGCTACAAGTGAATCGGCCAATCAGAGAGGCTGTGAAGAGTCAAATGACCTCACAGTGACCCCACTACAAAGAGAACATGATAaagataaaacaatataatcaATAAAGTTGAACTGCATGCTCCTAA

Function

NR:

description
mannose-specific lectin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189726 False 1005 TUCP 0.55 3 9709289 9714037
XM_007242797.3 True 1285 mRNA 0.48 3 9697155 9700312
XM_022677965.1 False 565 mRNA 0.53 3 9709283 9713591
XM_022677966.1 False 600 mRNA 0.52 4 9709283 9713584
XM_022677968.1 False 556 mRNA 0.54 3 9697155 9713580

Neighbor

gene id symbol gene type direction distance location
LOC103042459 nrbp2a,nrbp2,LOC108413492,LOC108267406,LOC107733885,LOC107599881,LOC107657444 coding downstream 24941 9574340 ~ 9672214 (-)
LOC103042138 puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443 coding downstream 133568 9532823 ~ 9563587 (-)
LOC103031272 NA coding downstream 556065 9138794 ~ 9141090 (-)
LOC103022255 epha4,epha4a,LOC108440631,LOC107583108,LOC107668967,LOC107706332 coding downstream 629579 8986473 ~ 9067576 (-)
LOC103021520 spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810 coding downstream 1071166 8545490 ~ 8625989 (-)
bfsp2 bfsp2 coding upstream 38627 9752664 ~ 9761502 (-)
LOC103037289 myl12.2,LOC103037289,LOC107098295,LOC107732590,LOC107746904,LOC103135689 coding upstream 108478 9822515 ~ 9830153 (-)
LOC103038251 prpf4b,LOC108267396,LOC107598186,LOC107670278,LOC107738454,LOC107554722,LOC106597319 coding upstream 136188 9850225 ~ 9861792 (-)
LOC103034406 elavl1,LOC103034406,LOC108444333,LOC105889513,LOC107684401,LOC108437281 coding upstream 438734 10152771 ~ 10160390 (-)
LOC103033434 apoda.1,LOC103033434,LOC108444329,LOC107557469,LOC107706326,LOC107659367 coding upstream 474761 10188798 ~ 10192684 (-)
G140146 NA non-coding downstream 4341 9692496 ~ 9692814 (-)
G140140 NA non-coding downstream 26568 9665648 ~ 9670587 (-)
G140122 NA non-coding downstream 48840 9646410 ~ 9648315 (-)
G140139 LOC108444165,LOC108425514 non-coding downstream 52761 9640722 ~ 9644394 (-)
G140137 NA non-coding downstream 58518 9621607 ~ 9638637 (-)
G140181 NA non-coding upstream 64240 9778277 ~ 9779566 (-)
G140182 NA non-coding upstream 68026 9782063 ~ 9782425 (-)
G140186 NA non-coding upstream 75971 9790008 ~ 9794211 (-)
G140214 NA non-coding upstream 107267 9821304 ~ 9821961 (-)
LOC111194301 NA non-coding upstream 133544 9847581 ~ 9849546 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 986056 8671024 ~ 8711099 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 2514372 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 2753021 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 3007432 6564903 ~ 6689723 (-)
G139587 NA other downstream 3266836 6417385 ~ 6430319 (-)
G140342 NA other upstream 321366 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 597060 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 797052 10511089 ~ 10514807 (-)
G140772 fam134b other upstream 1892198 11606235 ~ 11610529 (-)
G140975 NA other upstream 2459658 12173695 ~ 12174994 (-)

Expression


Co-expression Network