G140245


Basic Information

Item Value
gene id G140245
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9909631 ~ 9910544 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189858
acaaaccatagtcttaatatgactggttgtggtttgcacttattgtttgcactatataagacctagaaaagttttacttttatttttattcttatttctgtttcttataaaatcaatgtgtgagagaaacttGTCTGCCAGTCAAtattgcgttatatgattttgtcaaataaaactctagttttcaagccatttttcatttttgacgttttctttaaaattttatttttaaatctcgtctcgttctcgtgaacccagtatcgtgtctcgtctcgtctggTGATATttgtgtctcgtcacacccctagatTCTACTAATAGACTAACCCTCAAAATTCCAAAGTAAATAAACCTTTtcacattatttaaattatttataaaaattattttaaaatatcattaGATCTTATACAAAGCTTATTTCGATGTCTATTTAATGCATATTTAGTGCATTACTACACCAGATATCTAGCCTGTACAACCCAGTGTtagtataatgacaataatgttGAATTGTACTGAAACCACAGCACAGTTTCAGCATCTTCACCAACAGATGGCACTGTCTGCCAGGGCAGCAGCACTCCACCCACAGTGAGATAGTCTGCCTGTTAGCTGTGAGCTGCTGGCACAGAGACAGTAGTGAAGGCTGGAGTGTAGAACGATACTCCAGAAATAGAGACTTCCCCAGAAACTCTAGTAAAACCCAGAGTAACCCAAAGAAAGGCAGAAGTGAAAGACTAATTGGTCCTGCTTTCAGTTCCATGCAGGTGCTGGTCCGTACTCAGCATCTGCCCTTTCTTCAAGCCAAAAACAGAAAGAGTAAACCATCCATGAGTGAGACACCATTACATGCTAAATTCCTCCTCAACTGTACATCTAAAAGTATTCAGACACCCTTATAATTAATGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189858 True 914 lncRNA 0.36 1 9909631 9910544

Neighbor

gene id symbol gene type direction distance location
tmem53 tmem53,LOC107700979,LOC107730786,LOC107733878 coding upstream 5517 9897076 ~ 9904114 (+)
LOC103036973 LOC108430268 coding upstream 21054 9884209 ~ 9888577 (+)
LOC103040652 NA coding upstream 25505 9880166 ~ 9884126 (+)
LOC103040953 si:dkey-154p10.3,LOC108430290,LOC107736657,LOC108267397,LOC107730804,LOC107701000 coding upstream 33111 9862012 ~ 9876520 (+)
fam217a NA coding upstream 62310 9829902 ~ 9847321 (+)
LOC103041077 slc1a8b,LOC108444332,LOC107591333,LOC107557414,LOC107706395,LOC107738183,LOC105889468 coding downstream 220351 10130895 ~ 10147727 (+)
pex19 pex19,LOC107591335,LOC107659417,LOC107684402 coding downstream 253266 10163810 ~ 10169697 (+)
copa copa,LOC106600386 coding downstream 262400 10172944 ~ 10187687 (+)
LOC111194303 NA coding downstream 280267 10190811 ~ 10212330 (+)
LOC111194211 NA coding downstream 290280 10200824 ~ 10201754 (+)
G140169 NA non-coding upstream 160533 9748696 ~ 9749098 (+)
G140074 nrbp2,LOC108267406,LOC108413492,LOC106597174 non-coding upstream 300470 9597473 ~ 9609161 (+)
G140072 NA non-coding upstream 317828 9590347 ~ 9591803 (+)
G140057 LOC108413493,LOC108267407,LOC107599879 non-coding upstream 346007 9532829 ~ 9563624 (+)
G140060 NA non-coding upstream 370323 9538378 ~ 9539308 (+)
G140249 NA non-coding downstream 14589 9925133 ~ 9926043 (+)
G140251 NA non-coding downstream 15765 9926309 ~ 9926576 (+)
G140255 NA non-coding downstream 30484 9941028 ~ 9942279 (+)
G140274 NA non-coding downstream 187624 10098168 ~ 10156048 (+)
LOC103034722 NA non-coding downstream 214776 10125320 ~ 10130044 (+)
G140103 NA other upstream 164276 9743698 ~ 9745355 (+)
G140062 NA other upstream 368821 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 685650 9220274 ~ 9223981 (+)
LOC103030954 NA other upstream 747108 9161333 ~ 9162523 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 2863333 7041560 ~ 7046298 (+)
G140258 NA other downstream 79374 9989918 ~ 9990296 (+)
G140262 NA other downstream 83042 9993586 ~ 9994066 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 400556 10311100 ~ 10345471 (+)
G140402 NA other downstream 484976 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 516722 10427266 ~ 10444540 (+)

Expression


Co-expression Network