G140274


Basic Information

Item Value
gene id G140274
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10098168 ~ 10156048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189895
AcaatattgtggcgtctgtgtgtgtgtgcgtgtgtggctgctgtatgcctgtgtgtgcctgtctctgtgtgcccgcctctgtgtgtgtgtgtgtgccagGCTACGTGGTTGGTCCCTCCCCCGTTGCCTAGGTTATGGGGAGGGGCCATGCAGATGAGTGCCAGTTAGGGCACTCACCATAATGCAGCTGTGTGGTGGGTATAGGGACCTGGCTGTGTTTTGTGTGCTGAGGGCAGTTGGGtttcgctctcctagccttgttaaaggctgtaagcGAGTGGCAAGCCAGTTCAATAAAGAGCTTTGAGTACTTgtcatgagtctcacgggtcctccttcctcttccacgccacaatattaataa
>TU189897
AcaatattgtggcgtctgtgtgtgtgtgcgtgtgtggctgctgtatgcctgtgtgtgcctgtctctgtgtgcccgcctctgtgtgtgtatgtgtctgtgtgtgccagGCTACGTGGTTGGTCCCTCCCCCGTTGCCTAGGTTATGGGGAGGGGCCATGCAGATGAGTGCCAGTTAGGGCACTCACCATAATGCAGCTGTGTGGTGGGTATAGGGACCTGGCTGTGTTTTGTGTGCTGAGGGCAGTTGGGtttcgctctcctagccttgttaaaggctgtaagcGAGTGGCAAGCCAGTTCAATAAAGAGCTTTGAGTACTTgtcatgagtctcacgggtcctccttcctcttccacgccacaatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189895 False 364 lncRNA 0.54 2 10098168 10103457
TU189897 True 387 lncRNA 0.51 3 10098168 10156048

Neighbor

gene id symbol gene type direction distance location
tmem53 tmem53,LOC107700979,LOC107730786,LOC107733878 coding upstream 194054 9897076 ~ 9904114 (+)
LOC103036973 LOC108430268 coding upstream 209591 9884209 ~ 9888577 (+)
LOC103040652 NA coding upstream 214042 9880166 ~ 9884126 (+)
LOC103040953 si:dkey-154p10.3,LOC108430290,LOC107736657,LOC108267397,LOC107730804,LOC107701000 coding upstream 221648 9862012 ~ 9876520 (+)
fam217a NA coding upstream 250847 9829902 ~ 9847321 (+)
pex19 pex19,LOC107591335,LOC107659417,LOC107684402 coding downstream 7762 10163810 ~ 10169697 (+)
copa copa,LOC106600386 coding downstream 16896 10172944 ~ 10187687 (+)
LOC111194303 NA coding downstream 34763 10190811 ~ 10212330 (+)
LOC111194211 NA coding downstream 44776 10200824 ~ 10201754 (+)
samd7 samd7 coding downstream 63525 10219573 ~ 10234260 (+)
G140255 NA non-coding upstream 155889 9941028 ~ 9942279 (+)
G140251 NA non-coding upstream 171592 9926309 ~ 9926576 (+)
G140249 NA non-coding upstream 172125 9925133 ~ 9926043 (+)
G140245 NA non-coding upstream 187624 9909631 ~ 9910544 (+)
G140169 NA non-coding upstream 349070 9748696 ~ 9749098 (+)
G140297 NA non-coding downstream 42004 10198052 ~ 10201839 (+)
G140305 NA non-coding downstream 120829 10276877 ~ 10278511 (+)
G140331 NA non-coding downstream 151372 10307420 ~ 10307715 (+)
G140341 prkci,LOC107659412,LOC107558824 non-coding downstream 176780 10332828 ~ 10335069 (+)
G140391 NA non-coding downstream 204943 10360991 ~ 10361377 (+)
G140262 NA other upstream 104102 9993586 ~ 9994066 (+)
G140258 NA other upstream 107872 9989918 ~ 9990296 (+)
G140103 NA other upstream 352813 9743698 ~ 9745355 (+)
G140062 NA other upstream 557358 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 874187 9220274 ~ 9223981 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 155052 10311100 ~ 10345471 (+)
G140402 NA other downstream 239472 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 271218 10427266 ~ 10444540 (+)
G140520 NA other downstream 642497 10798545 ~ 10798891 (+)
G140659 NA other downstream 1224050 11380098 ~ 11383505 (+)

Expression


Co-expression Network