G140336 (prkci,LOC107659412,LOC107706387,LOC102783124)


Basic Information

Item Value
gene id G140336
gene name prkci,LOC107659412,LOC107706387,LOC102783124
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10311100 ~ 10345471 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189975
AGTttgaatcttttttatttaaacagatgttttaatgtttttcattggacagaagCTTCATCAGGTAACAGAAGAGGAAGAATAGCTGATTATTTTCTTCTCATATTAAAGAACTGCTGCTGAGTGTGTGACCACACCACGGTCCTCACAACCAGACAGAGAGCTCAGAGAGTTAACTTACAGCtcaaagtaacaaagtaaaaaaaaaagagtgagttTTTAGCTGTGAttggtgcagtgtgtgtgtgtttggagagtGTGTGAAGTATGTAATGGTCACTGAGGGTTCTGTAGAGGAATGTGTAATGAAGTGTAAATGGTTCAATCATTTGTTGCACCGGGGTGCTAACGGACTCCTCACCACCAACATCTGTGACCCCATATCTGCTGGGCTGGAatgagtgctgtgtgtgtgtgtgtgtgtttctgtagatGTAGTGTTAAAGTATGTAATTTGGTCATTAGTCTCTGAGGTCCATTTAATGctacaccaaagcaaccatgaCAGTACAGTACAAAAACCTTATATCTCCAGAACTGCAACAGGAGAAGGAAAACCTTCAGttgattttaatgtaaaaatacattctaggaacttttaaacatttctatttgttaTTGTTCaggtttatataaatataaagctttttgcatgacagcaagcttaacttatttaaatatatATTTAAATATATAGACTTAAAATAGTAAACTAACGCGAACTCACCCGCGGTAGTAGGCCTTCACCCGGACCTGGTGCTGGTTCTCCCCCGGGTGGGTCGCAGTGCTGTCCCGCACCGTCGGCATCGTGAGCCGCCAGCCAGCGAAGCCCCGGAGAAAACCGCCTTATCCGGCTCGACTACGGTTTAAGCTAGTGCCGGTCAGCGGAGCCGGTCCTCCTGGGTGTGTCCGCGGAACAGAACGGAGCTGTAAACGGGCTAAAGGCAGGCTGTGAGCGGATCTGACCGAAACACAACAGCGGCGGCCTGGTCTGGAGAACACAGCCGGAGTC
>TU189976
AGTttgaatcttttttatttaaacagatgttttaatgtttttcattggacagaagCTTCATCAGGTAACAGAAGAGGAAGAATAGCTGATTATTTTCTTCTCATATTAAAGAACTGCTGCTGAGTGTGTGACCACACCACGGTCCTCACAACCAGACAGAGAGCTCAGAGAGTTAACTTACAGCtcaaagtaacaaagtaaaaaaaaaagagtgagttTTTAGCTGTGAttggtgcagtgtgtgtgtgtttggagagtGTGTGAAGTATGTAATGGTCACTGAGGGTTCTGTAGAGGAATGTGTAATGAAGTGTAAATGGTTCAATCATTTGTTGCACCGGGGTGCTAACGGACTCCTCACCACCAACATCTGTGACCCCATATCTGCTGGGCTGGAatgagtgctgtgtgtgtgtgtGTCTCTGTAGATGATTCCTCGTTCATGCAGGTAGTTCAGTGCCAGACTGATTTCAGCAGAATAAAACCTGGCGTGCTCTTCCGGAAGTTTCCTCTGCCGCTGCATGTGGAACATCAGGTCTCCTCCATTTACATACTCGATCACGAAGAACAGCCTGCTCTCAGTCTGGAAGCAGGAGTGAAGACCCACCAGGAACGGGTGATTAGACGCCTGTTCAAACACATGCTTTTCTGTTTGGACCCAATCAATGTCCTCATCATCGTTCACCAGTTCCTTCTTTACCACCTTCATGGCGTAaattctttctgttttcttcagCCGGACCAGCAGCACTTTCGCGTAGCTTCCGCGGCCGATCACCCTCAGCAGGTCAAAATCAGCCAGACCCAGACTGGAGGTGGCTTTACCAGGGTCTCTGCTGCCCCCCgc

Function

symbol description
prkci Predicted to enable phospholipid binding activity and protein serine/threonine kinase activity. Acts upstream of with a negative effect on apical protein localization. Acts upstream of or within several processes, including animal organ development; digestive tract development; and morphogenesis of an epithelium. Located in zonula adherens. Is intrinsic component of plasma membrane. Is expressed in several structures, including blastoderm; common cardinal vein; eye; posterior lateral line primordium; and pronephric duct. Orthologous to human PRKCI (protein kinase C iota).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189975 True 1012 lncRNA 0.44 2 10311100 10345471
TU189976 False 847 TUCP 0.46 5 10311100 10326919

Neighbor

gene id symbol gene type direction distance location
gpr160 NA coding upstream 34880 10272014 ~ 10276220 (+)
sec62 sec62,LOC107738178,LOC102781860 coding upstream 65098 10235722 ~ 10246002 (+)
samd7 samd7 coding upstream 76840 10219573 ~ 10234260 (+)
LOC111194303 NA coding upstream 98770 10190811 ~ 10212330 (+)
LOC111194211 NA coding upstream 109346 10200824 ~ 10201754 (+)
phc3 NA coding downstream 5425 10350896 ~ 10369990 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding downstream 140251 10485722 ~ 10524437 (+)
LOC103039831 ubtfl,LOC108267581 coding downstream 185520 10530991 ~ 10552601 (+)
LOC103042199 LOC108437251,LOC108267580 coding downstream 212986 10558457 ~ 10680089 (+)
LOC103039003 fam49b,LOC108437217,LOC108267758,LOC107713994,LOC106592588,LOC107657432,LOC107718035,LOC107556887,LOC107701021 coding downstream 338117 10683588 ~ 10750675 (+)
G140331 NA non-coding upstream 3385 10307420 ~ 10307715 (+)
G140305 NA non-coding upstream 32589 10276877 ~ 10278511 (+)
G140297 NA non-coding upstream 109261 10198052 ~ 10201839 (+)
G140274 NA non-coding upstream 155052 10098168 ~ 10156048 (+)
LOC103034722 NA non-coding upstream 181056 10125320 ~ 10130044 (+)
G140391 NA non-coding downstream 15520 10360991 ~ 10361377 (+)
G140392 NA non-coding downstream 25981 10371452 ~ 10374169 (+)
G140394 NA non-coding downstream 30776 10376247 ~ 10445727 (+)
G140401 NA non-coding downstream 45920 10391391 ~ 10394260 (+)
G140404 dapk3,LOC103038916,LOC106600507 non-coding downstream 68073 10413544 ~ 10416765 (+)
G140262 NA other upstream 317034 9993586 ~ 9994066 (+)
G140258 NA other upstream 320804 9989918 ~ 9990296 (+)
G140103 NA other upstream 565745 9743698 ~ 9745355 (+)
G140062 NA other upstream 770290 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 1087119 9220274 ~ 9223981 (+)
G140402 NA other downstream 50049 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 81795 10427266 ~ 10444540 (+)
G140520 NA other downstream 453074 10798545 ~ 10798891 (+)
G140659 NA other downstream 1034627 11380098 ~ 11383505 (+)
LOC111194237 NA other downstream 1110014 11455485 ~ 11478740 (+)

Expression


Co-expression Network