G140342


Basic Information

Item Value
gene id G140342
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10035403 ~ 10103457 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189983
CCCTTGCCAACATCAACAGTCAGCTCCGTTAATCCCAGGAGAGcgataggatctccggtggccGAAGAGAGAGCGATGCGCCGGCTGCAGTCCATCCCAAACTCGCCTGCCACATCCATCGCGAGCTCAGGCTTTATCAGCGAGACTGACGAGCCCGTGTCCACCAGCGCGTCCACCGTTACTCCATTCAGCGTGCACTTCAGAAAATAGCCGCCGGGTCCGACAGCTCCGTGATCAGGTCCCGAGGGTAATCCTAGAATCCCTGGGGCCACCGTAACCCTCACTTGGTGGTCCCAGCTCCGTTTCCCCGACCGGCCGCACTGCGCTCGcttgtggccacgccccccGCAATGCCAGCACTCCAGTTGCGCATCAGGCCGGCTCCGCCTCCATCTCGGTGGATCATGGGCTCCGGGCGACGCCCCCCACGGTCCCGGATGGCTGGACAGGATGAGTTCGGACCGCTCAGCCACCTCCACCGCGGCCTCCAGGGTCTGCGGGTCGGCCAGTCTCACATGTTTGCGCAGCTCGCCTGGCTTCAGGGCGCGCAGGAAATTATCCAGCGCGAGACTTCTCTGAGCCGCTCGCGGGAATGCCGGATAAGCTTGGCGGGTTAGCAGAGCCATCTCAGATGCCAGCACGCCCAAAGTCTCTCCCCGCTGCCGGCGCCGCGTCCGCCACTAGCATTttggcggccgcctcggaaGGTTGACGGCTGAAGCGGGTTCTCAGCGCCCGTGTCAAGTCAGACAGCTCGCAGCGGCACTCCGCGGGGAGCTCGATCAGCACCCTCAGTGCGTCTGCCTGCAGCGCCAGACAGAGGTTGGCCGCCGTCTCAGCATCCGTCCAGCCCGCACAGCCCGCCACGATCTCCAGCTGAGCTTCGAAGGCCGTCCAGTCAGCGCTGCCGTCATAGCATGCCAGGCGGGGATGAGCCGTCAAGCTCGCCGTCAGCGCGCCGTCCACTCCGTGAGCCGgtgccgccgtcctcgcgccatccgctccgcGGGCTCGACCTTCGGACAGCCTGCTGGCGCCGTCAGGTCTGGGTCCGCTCCGCTGGTGAGTCTTGCCCCTCGTCCGCTGGTCCGCCGTTATCCTCTTCAGCCGTTCGATTTCCCCTGCCAGCATCTCCATATCATCCAGCAGGGCCGcttctgacaccaaatgtggcgtggaagaggaaggaggacccgtgagactcatgacAAGTACTCAAAGCTCTTTATTGAACTGGCTTGCCACTCgcttacagcctttaacaaggctaggagagcgaaaCCCAACTGCCCTCAGCACACAAAACACAGCCAGGTCCCTATACCCACCACACAGCTGCATTATGGTGAGTGCCCTAACTGGCACTCATCTGCATGGCCCCTCCCCATAACCTAGGCAACGGGGGAGGGACCAACCACGTAGCctggcacacacagacacatacacacacagaggcgggcacacagagacaggcacacacaggcatacagcagccacacacgcacacacacacagacgccacaatattgT
>TU189985
CCCTTGCCAACATCAACAGTCAGCTCCGTTAATCCCAGGAGAGcgataggatctccggtggccGAAGAGAGAGCGATGCGCCGGCTGCAGTCCATCCCAAACTCGCCTGCCACATCCATCGCGAGCTCAGGCTTTATCAGCGAGACTGACGAGCCCGTGTCCACCAGCGCGTCCACCGTTACTCCATTCAGCGTGCACTTCAGAAAATAGCCGCCGGGTCCGACAGCTCCGTGATCAGGTCCCGAGGGTAATCCTAGAATCCCTGGGGCCACCGTAACCCTCACTTGGTGGTCCCAGCTCCGTTTCCCCGACCGGCCGCACTGCGCTCGcttgtggccacgccccccGCAATGCCAGCACTCCAGTTGCGCATCAGGCCGGCTCCGCCTCCATCTCGGTGGATCATGGGCTCCGGGCGACGCCCCCCACGGTCCCGGATGGCTGGACAGGATGAGTTCGGACCGCTCAGCCACCTCCACCGCGGCCTCCAGGGTCTGCGGGTCGGCCAGTCTCACATGTTTGCGCAGCTCGCCTGGCTTCAGGGCGCGCAGGAAATTATCCAGCGCGAGACTTCTCTGAGCCGCTCGCGGGAATGCCGGATAAGCTTGGCGGGTTAGCAGAGCCATCTCAGATGCCAGCACGCCCAAAGTCTCTCCCCGCTGCCGGCGCCGCGTCCGCCACTAGCATTttggcggccgcctcggaaGGTTGACGGCTGAAGCGGGTTCTCAGCGCCCGTGTCAAGTCAGACAGCTCGCAGCGGCACTCCGCGGGGAGCTCGATCAGCACCCTCAGTGCGTCTGCCTGCAGCGCCAGACAGAGGTTGGCCGCCGTCTCAGCATCCGTCCAGCCCGCACAGCCCGCCACGATCTCCAGCTGAGCTTCGAAGGCCGTCCAGTCAGCGCTGCCGTCATAGCATGCCAGGCGGGGATGAGCCGTCAAGCTCGCCGTCAGCGCGCCatccgctccgcGGGCTCGACCTTCGGACAGCCTGCTGGCGCCGTCAGGTCTGGGTCCGCTCCGCTGGTGAGTCTTGCCCCTCGTCCGCTGGTCCGCCGTTATCCTCTTCAGCCGTTCGATTTCCCCTGCCAGCATCTCCATATCATCCAGCAGGGCCGcttctgacaccaaatgtggcgtggaagaggaaggaggacccgtgagactcatgacAAGTACTCAAAGCTCTTTATTGAACTGGCTTGCCACTCgcttacagcctttaacaaggctaggagagcgaaaCCCAACTGCCCTCAGCACACAAAACACAGCCAGGTCCCTATACCCACCACACAGCTGCATTATGGTGAGTGCCCTAACTGGCACTCATCTGCATGGCCCCTCCCCATAACCTAGGCAACGGGGGAGGGACCAACCACGTAGCctggcacacacaggcatacagcagccacacacgcacacacacacagacgccacaatattgT
>TU189988
CCCTTGCCAACATCAACAGTCAGCTCCGTTAATCCCAGGAGAGcgataggatctccggtggccGAAGAGAGAGCGATGCGCCGGCTGCAGTCCATCCCAAACTCGCCTGCCACATCCATCGCGAGCTCAGGCTTTATCAGCGAGACTGACGAGCCCGTGTCCACCAGCGCGTCCACCGTTACTCCATTCAGCGTGCACTTCAGAAAATAGCCGCCGGGTCCGACAGCTCCGTGATCAGGTCCCGAGGGTAATCCTAGAATCCCTGGGGCCACCGTAACCCTCACTTGGTGGTCCCAGCTCCGTTTCCCCGACCGGCCGCACTGCGCTCGcttgtggccacgccccccGCAATGCCAGCACTCCAGTTGCGCATCAGGCCGGCTCCGCCTCCATCTCGGTGGATCATGGGCTCCGGGCGACGCCCCCCACGGTCCCGGATGGCTGGACAGGATGAGTTCGGACCGCTCAGCCACCTCCACCGCGGCCTCCAGGGTCTGCGGGTCGGCCAGTCTCACATGTTTGCGCAGCTCGCCTGGCTTCAGGGCGCGCAGGAAATTATCCAGCGCGAGACTTCTCTGAGCCGCTCGCGGGAATGCCGGATAAGCTTGGCGGGTTAGCAGAGCCATCTCAGATGCCAGCACGCCCAAAGTCTCTCCCCGCTGCCGGCGCCGCGTCCGCCACTAGCATTttggcggccgcctcggaaGGTTGACGGCTGAAGCGGGTTCTCAGCGCCCGTGTCAAGTCAGACAGCTCGCAGCGGCACTCCGCGGGGAGCTCGATCAGCACCCTCAGTGCGTCTGCCTGCAGCGCCAGACAGAGGTTGGCCGCCGTCTCAGCATCCGTCCAGCCCGCACAGCCCGCCACGATCTCCAGCTGAGCTTCGAAGGCCGTCCAGTCAGCGCTGCCGTCATAGCATGCCAGGCGGGGATGAGCCGTCAAGCTCGCCGTCAGCGCGCCGTCCATtctgggagccagcgccgccgtcctcgcgccatccgctccgcGGGCTCGACCTTCGGACAGCCTGCTGGCGCCGTCAGGTCTGGGTCCGCTCCGCTGGTGAGTCTTGCCCCTCGTCCGCTGGTCCGCCGTTATCCTCTTCAGCCGTTCGATTTCCCCTGCCAGCATCTCCATATCATCCAGCAGGGCCGcttctgacaccaaatgtggcgtggaagaggaaggaggacccgtgagactcatgacAAGTACTCAAAGCTCTTTATTGAACTGGCTTGCCACTCgcttacagcctttaacaaggctaggagagcgaaaCCCAAcctcacctaca
>TU189989
CCCTTGCCAACATCAACAGTCAGCTCCGTTAATCCCAGGAGAGcgataggatctccggtggccGAAGAGAGAGCGATGCGCCGGCTGCAGTCCATCCCAAACTCGCCTGCCACATCCATCGCGAGCTCAGGCTTTATCAGCGAGACTGACGAGCCCGTGTCCACCAGCGCGTCCACCGTTACTCCATTCAGCGTGCACTTCAGAAAATAGCCGCCGGGTCCGACAGCTCCGTGATCAGGTCCCGAGGGTAATCCTAGAATCCCTGGGGCCACCGTAACCCTCACTTGGTGGTCCCAGCTCCGTTTCCCCGACCGGCCGCACTGCGCTCGcttgtggccacgccccccGCAATGCCAGCACTCCAGTTGCGCATCAGGCCGGCTCCGCCTCCATCTCGGTGGATCATGGGCTCCGGGCGACGCCCCCCACGGTCCCGGATGGCTGGACAGGATGAGTTCGGACCGCTCAGCCACCTCCACCGCGGCCTCCAGGGTCTGCGGGTCGGCCAGTCTCACATGTTTGCGCAGCTCGCCTGGCTTCAGGGCGCGCAGGAAATTATCCAGCGCGAGACTTCTCTGAGCCGCTCGCGGGAATGCCGGATAAGCTTGGCGGGTTAGCAGAGCCATCTCAGATGCCAGCACGCCCAAAGTCTCTCCCCGCTGCCGGCGCCGCGTCCGCCACTAGCATTttggcggccgcctcggaaGGTTGACGGCTGAAGCGGGTTCTCAGCGCCCGTGTCAAGTCAGACAGCTCGCAGCGGCACTCCGCGGGGAGCTCGATCAGCACCCTCAGTGCGTCTGCCTGCAGCGCCAGACAGAGGTTGGCCGCCGTCTCAGCATCCGTCCAGCCCGCACAGCCCGCCACGATCTCCAGCTGAGCTTCGAAGGCCGTCCAGTCAGCGCTGCCGTCATAGCATGCCAGGCGGGGATGAGCCGTCAAGCTCGCCGTCAGCGCGCCGTCCATtctgggagccagcgccgccgtctcCACGCCATCCGCTCCGCGAGCCGGCGCTGACGTCATCGCGCCGTCCACTCCGTGAGCCGgtgccgccgtcctcgcgccatccgctccgcGGGCTCGACCTTCGGACAGCCTGCTGGCGCCGTCAGGTCTGGGTCCGCTCCGCTGGTGAGTCTTGCCCCTCGTCCGCTGGTCCGCCGTTATCCTCTTCAGCCGTTCGATTTCCCCTGCCAGCATCTCCATATCATCCAGCAGGGCCGcttctgacaccaaatgtggcgtggaagaggaaggaggacccgtgagactcatgacAAGTACTCAAAGCTCTTTATTGAACTGGCTTGCCACTCgcttacagcctttaacaaggctaggagagcgaaaCCCAACTGCCCTCAGCACACAAAACACAGCCAGGTCCCTATACCCACCACACAGCTGCATTATGGTGAGTGCCCTAACTGGCACTCATCTGCATGGCCCCTCCCCATAACCTAGGCAACGGGGGAGGGACCAACCACGTAGCctggcacacacagacacatacacacacagaggcgggcacacagagacaggcacacacaggcatacagcagccacacacgcacacacacacagacgccacaatattagagatgaggg
>TU189990
ttattaatattgtggcgtggaagaggaaggaggacccgtgagactcatgacAAGTACTCAAAGCTCTTTATTGAACTGGCTTGCCACTCgcttacagcctttaacaaggctaggagagcgaaaCCCAACTGCCCTCAGCACACAAAACACAGCCAGGTCCCTATACCCACCACACAGCTGCATTATGGTGAGTGCCCTAACTGGCACTCATCTGCATGGCCCCTCCCCATAACCTAGGCAACGGGGGAGGGACCAACCACGTAGCctggcacacacacacacacagaggcgggcacacagagacaggcacacacaggcatacagcagccacacacgcacacacacacagacgccacaatattgT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189983 False 1530 lncRNA 0.63 2 10098168 10099769
TU189985 False 1448 TUCP 0.63 3 10098168 10099769
TU189988 False 1297 lncRNA 0.64 3 10035403 10099769
TU189989 True 1611 TUCP 0.63 2 10068500 10099769
TU189990 False 364 lncRNA 0.54 2 10098168 10103457

Neighbor

gene id symbol gene type direction distance location
LOC103038251 prpf4b,LOC108267396,LOC107598186,LOC107670278,LOC107738454,LOC107554722,LOC106597319 coding downstream 173611 9850225 ~ 9861792 (-)
LOC103037289 myl12.2,LOC103037289,LOC107098295,LOC107732590,LOC107746904,LOC103135689 coding downstream 205250 9822515 ~ 9830153 (-)
bfsp2 bfsp2 coding downstream 273901 9752664 ~ 9761502 (-)
LOC103042459 nrbp2a,nrbp2,LOC108413492,LOC108267406,LOC107733885,LOC107599881,LOC107657444 coding downstream 363189 9574340 ~ 9672214 (-)
LOC103042138 puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443 coding downstream 471816 9532823 ~ 9563587 (-)
LOC103034406 elavl1,LOC103034406,LOC108444333,LOC105889513,LOC107684401,LOC108437281 coding upstream 49314 10152771 ~ 10160390 (-)
LOC103033434 apoda.1,LOC103033434,LOC108444329,LOC107557469,LOC107706326,LOC107659367 coding upstream 85341 10188798 ~ 10192684 (-)
LOC103032176 nadk,LOC108444346,LOC107557499,LOC107591341,LOC107738176,LOC107659414 coding upstream 146776 10250233 ~ 10267983 (-)
skil skil coding upstream 176095 10279552 ~ 10303528 (-)
LOC103037547 NA coding upstream 267951 10371408 ~ 10394166 (-)
G140261 NA non-coding downstream 42271 9992697 ~ 9993132 (-)
G140257 NA non-coding downstream 81581 9953503 ~ 9953822 (-)
G140256 NA non-coding downstream 93224 9941354 ~ 9942179 (-)
G140250 NA non-coding downstream 109449 9925442 ~ 9925954 (-)
G140237 LOC108430268 non-coding downstream 147418 9885190 ~ 9887985 (-)
G140351 NA non-coding upstream 4254 10107711 ~ 10116183 (-)
G140354 NA non-coding upstream 46417 10149874 ~ 10152437 (-)
G140347 NA non-coding upstream 64402 10167859 ~ 10169699 (-)
G140380 NA non-coding upstream 132333 10235790 ~ 10236734 (-)
G140374 sec62 non-coding upstream 141517 10244974 ~ 10248465 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 321366 9697155 ~ 9714037 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 1324304 8671024 ~ 8711099 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 2852620 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 3091269 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 3345680 6564903 ~ 6689723 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 207640 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 407632 10511089 ~ 10514807 (-)
G140772 fam134b other upstream 1502778 11606235 ~ 11610529 (-)
G140975 NA other upstream 2070238 12173695 ~ 12174994 (-)
G141020 NA other upstream 2245102 12348559 ~ 12415155 (-)

Expression


Co-expression Network