G140392


Basic Information

Item Value
gene id G140392
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10371452 ~ 10374169 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190072
ctgcagcagtaacccagcacacctacattGTGTAAATTAGGGTCAGCTAATCAgagattcacacactgtcctgtgatgctctcaggatgttttatatacagtgaAGGACGGAGTGCTATAAGGAACTTCACACTTGTTTTAAAGTGTCTGTGGCACATATATCTCCAAGGGTTCTTCTAGGTTACTCTGGTCCCTAATGTGGTTGCGTTTGGCACCCCTACTCTAGATGCTCACCTCAGGCAGAAGCACGTCCAGTATGAATGAGATGCGGTCAGTGTTCTCCAGGCTCGTGTTGGTTTGGTCTGCAGACTCGCACAGTTTCTGCAGGTAGCGGTACACCTTGTCCACCTGCTCCTCATCCTCCAGGTACACATCCACCACTGAGCGGCTGCAGCTCTGCAGTGCCTCCAGCCACTTCGATGGCTCCTGACCACAGATCACTGCCTTTAAGTGGTTTTCAACTCCACGTTTCTCCACTATGAACTCCACCAGCCTCTTGTTGGCACGGTTACGGGCAGCCAGTGACCGATCCGGTAGCACTTTTTTTGAGTGGATCTCGTTGGGCTGTTCAATCTCTTCCTCCTCAAGCTCTCCTGCGTTTTCTCCCTCGCATTCAGGCTCCTCACTCAGCAGCTGCTGGCTGGGAAAGGTCAGCTCAGACGCACCCTCAGGATACTGCCTCCTCACAG
>TU190073
atttcacaTTCACAATAATAAACATGTCGTGTTGAGTCACGTAGTCGTGACTTGTAATAGAGTGTAAATGCAGTAAGTGATTAAAAAAGGAGAATTTCATGCACTTTTTTCTGCTGCTGAAATTGTTCATTAATGCACTCGAACAAGCTCCTCCCATATAGAGTTGTCACAGTGACGGCCTCACAGTCACGGCTTCAGCTTCATCTGCTGCTCAATCATCATATCAAATTCCTGCCGTTCTCTGTTACTGTGACAAGGTCCTCGCCGATACTTCTCCTCAGCTTTGACCAGGGACAGCCGGTCCACTTCAGCTATGGCATGAATAATAGCCTCAGGCAGAAGCACGTCCAGTATGAATGAGATGCGGTCAGTGTTCTCCAGGCTCGTGTTGGTTTGGTCTGCAGACTCGCACAGTTTCTGCAGGTAGCGGTACACCTTGTCCACCTGCTCCTCATCCTCCAGGTACACATCCACCACTGAGCGGCTGCAGCTCTGCAGTGCCTCCAGCCACTTCGATGGCTCCTGACCACAGATCACTGCCTTTAAGTGGTTTTCAACTCCACGTTTCTCCACTATGAACTCCACCAGCCTCTTGTTGGCACGGTTACGGGCAGCCAGTGACCGATCCGGTAGCACTTTTTTTGAGTGGATCTCGTTGGGCTGTTCAATCTCTTCCTCCTCAAGCTCTCCTGCGTTTTCTCCCTCGCATTCAGGCTCCTCACTCAGCAGCTGCTGGCTGGGAAAGGTCAGCTCAGACGCACCCTCAGGATACTGCCTCCTCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190072 False 689 lncRNA 0.52 2 10373322 10374169
TU190073 True 785 lncRNA 0.50 4 10371452 10374169

Neighbor

gene id symbol gene type direction distance location
phc3 NA coding upstream 1462 10350896 ~ 10369990 (+)
gpr160 NA coding upstream 95232 10272014 ~ 10276220 (+)
sec62 sec62,LOC107738178,LOC102781860 coding upstream 125450 10235722 ~ 10246002 (+)
samd7 samd7 coding upstream 137192 10219573 ~ 10234260 (+)
LOC111194303 NA coding upstream 159122 10190811 ~ 10212330 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding downstream 111553 10485722 ~ 10524437 (+)
LOC103039831 ubtfl,LOC108267581 coding downstream 156822 10530991 ~ 10552601 (+)
LOC103042199 LOC108437251,LOC108267580 coding downstream 184288 10558457 ~ 10680089 (+)
LOC103039003 fam49b,LOC108437217,LOC108267758,LOC107713994,LOC106592588,LOC107657432,LOC107718035,LOC107556887,LOC107701021 coding downstream 309419 10683588 ~ 10750675 (+)
LOC103038209 amph coding downstream 831381 11205550 ~ 11308230 (+)
G140391 NA non-coding upstream 10075 10360991 ~ 10361377 (+)
G140341 prkci,LOC107659412,LOC107558824 non-coding upstream 36383 10332828 ~ 10335069 (+)
G140331 NA non-coding upstream 63737 10307420 ~ 10307715 (+)
G140305 NA non-coding upstream 92941 10276877 ~ 10278511 (+)
G140297 NA non-coding upstream 169613 10198052 ~ 10201839 (+)
G140394 NA non-coding downstream 2078 10376247 ~ 10445727 (+)
G140401 NA non-coding downstream 17222 10391391 ~ 10394260 (+)
G140404 dapk3,LOC103038916,LOC106600507 non-coding downstream 39375 10413544 ~ 10416765 (+)
G140405 dapk3,LOC103038916,LOC107706382,LOC107738169 non-coding downstream 43030 10417199 ~ 10419032 (+)
G140418 NA non-coding downstream 89828 10463997 ~ 10464684 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other upstream 25981 10311100 ~ 10345471 (+)
G140262 NA other upstream 377386 9993586 ~ 9994066 (+)
G140258 NA other upstream 381156 9989918 ~ 9990296 (+)
G140103 NA other upstream 626097 9743698 ~ 9745355 (+)
G140062 NA other upstream 830642 9539775 ~ 9540810 (+)
G140402 NA other downstream 21351 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 53097 10427266 ~ 10444540 (+)
G140520 NA other downstream 424376 10798545 ~ 10798891 (+)
G140659 NA other downstream 1005929 11380098 ~ 11383505 (+)
LOC111194237 NA other downstream 1081316 11455485 ~ 11478740 (+)

Expression


Co-expression Network