G140394


Basic Information

Item Value
gene id G140394
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10376247 ~ 10445727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190077
tgtgtgtgtgtgtgtgagagagcgcgtgtgtgtgtgtgagagcgtgtgtgtgtgtgtgagagtgcgagtgtgtgtgtgtgtgagagagcgagtgtgtgggtgagtgagagagagacgggaGTACTGACACATTTAAATTGAAGCAGTTTTAGCctttctgttgtgtttgttttctggcCTTAATTCTGTAGATGTGATTCTGTAGATGGATTGAATGTGTTTGTGCGGCTTATGATCAGCATTATAAAGAAATCTGATACCATGATGGACTGAAACACAGAACCACAGTGTGGTAAACTTTACCGTGACActcatgctttttttaagttatattCAATCATTTCAGTAGTAGAATGTTTGTATTTAgggtactttttattatttgaattttGTGCAATGGTCAGGTGGTAGACCTGTTTACTACGTTGTTTAGAGACACTAAATAACCTCAGCACTGTAACCCTCAGTGCGTCATTGGTGTTGTGTCTTATAGTCAGAATCCTGCAGATCCAAATTGAAGTACAGAGTCTGAGATTGATTTTTTAATTCATATCACATATCATATCATTTAACTGAATTCATTAGGTAAAACTGAATTTTTAACTTAAACTAAAAAGTTATAAACAAAACcacaataaaccaaaatatattttgttcaaatttttaaaatacatttccaGCTGAAATGTAATCTTTGGGTTATGAATAAGCaatgtcaaatataaaatagaatttCAGATTAAATTATCTGTATGATTTGAAATTGCTCCATTATTACCTACAGGTATCTTAGTTCAAAGTACAAAATCAGTTCTATTCTGTTAGAAGGATTCTAACTGTAGACAGGTTGACTGGGATAGAGATATTTctggtttttattttaaatatttttttaggcaGAGGAGAGTCATGTTTGCACAGACTTTATAAGACAGGCGTTGaacatgtttaactgttacagtaaaAGACAGGTGTAGAAAACTGTTTTAAGATTGCACTCAATAAAGGAACAATGTATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190077 True 1021 lncRNA 0.34 2 10376247 10445727

Neighbor

gene id symbol gene type direction distance location
phc3 NA coding upstream 6257 10350896 ~ 10369990 (+)
gpr160 NA coding upstream 100027 10272014 ~ 10276220 (+)
sec62 sec62,LOC107738178,LOC102781860 coding upstream 130245 10235722 ~ 10246002 (+)
samd7 samd7 coding upstream 141987 10219573 ~ 10234260 (+)
LOC111194211 NA coding upstream 174493 10200824 ~ 10201754 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding downstream 39995 10485722 ~ 10524437 (+)
LOC103039831 ubtfl,LOC108267581 coding downstream 85264 10530991 ~ 10552601 (+)
LOC103042199 LOC108437251,LOC108267580 coding downstream 112730 10558457 ~ 10680089 (+)
LOC103039003 fam49b,LOC108437217,LOC108267758,LOC107713994,LOC106592588,LOC107657432,LOC107718035,LOC107556887,LOC107701021 coding downstream 237861 10683588 ~ 10750675 (+)
LOC103038209 amph coding downstream 759823 11205550 ~ 11308230 (+)
G140392 NA non-coding upstream 2078 10371452 ~ 10374169 (+)
G140391 NA non-coding upstream 14870 10360991 ~ 10361377 (+)
G140341 prkci,LOC107659412,LOC107558824 non-coding upstream 41178 10332828 ~ 10335069 (+)
G140331 NA non-coding upstream 68532 10307420 ~ 10307715 (+)
G140305 NA non-coding upstream 97736 10276877 ~ 10278511 (+)
G140418 NA non-coding downstream 18270 10463997 ~ 10464684 (+)
G140444 NA non-coding downstream 26996 10472723 ~ 10472990 (+)
G140457 NA non-coding downstream 82038 10527765 ~ 10534780 (+)
G140460 NA non-coding downstream 127441 10573168 ~ 10575778 (+)
G140466 NA non-coding downstream 292990 10738717 ~ 10738997 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other upstream 30776 10311100 ~ 10345471 (+)
G140262 NA other upstream 382181 9993586 ~ 9994066 (+)
G140258 NA other upstream 385951 9989918 ~ 9990296 (+)
G140103 NA other upstream 630892 9743698 ~ 9745355 (+)
G140062 NA other upstream 835437 9539775 ~ 9540810 (+)
G140520 NA other downstream 352818 10798545 ~ 10798891 (+)
G140659 NA other downstream 934371 11380098 ~ 11383505 (+)
LOC111194237 NA other downstream 1009758 11455485 ~ 11478740 (+)
G140931 NA other downstream 1792261 12237988 ~ 12240625 (+)
G140930 NA other downstream 1933269 12378996 ~ 12381554 (+)

Expression


Co-expression Network