G140402


Basic Information

Item Value
gene id G140402
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10395520 ~ 10399976 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190104
ttcaaccaaccaaaacgggcacatgtcaccccgctgctcattgagctccactggctaccagttgatgctcgtatcaaattcaaaactcttacaatcgcctacaaggtgatgacagaacaggctccttcctacctgcactcactcctgaaggcttacgctttaccaaacaaacattcacacaaagcaatccagactgttctcatacagagttccccaatggtggaacaaactaccttccactaccagatcaggagaatctctcgctatctttaagagactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaacacactaactacttctaacctcatttccttcttcccctccttcacttctctatccctttatttcccttcgacctcctttaagccctatctaaaaatggtttatcttaattcctattacttttgtacttcattattgtaagtcgctttggacaaaagcgtctgccaaatgtaatgtaatgtaatgtaaaaaaacatatgcaTCACCCTCTAACTCTGCAGACTGTAGTGTAACTTGGCCTAAAGTAAAGCCCTGATGGAATGTAGCGTGACTtttcagcaatgctattttttgCACCTGGACATAACACACAgacatgtatacacacacatcatcTGAGCTACACACTTGTCAAAGACCGAGTACTTTACCCAGGGCAGAACATTTTCCACTAATGTTTTCCTTGTTTTGATTATAATCTTTGAATGTTTGGACTGAACCTCAGCAGGCTGGACTTGGTGCCACAGAGGCCAGTTCTTATcgatgtttaaaaacagcagtgttTCCATTACAGTGTGTTCTGTACCCTCATTCAGAGCCCGTTCCTGGGACAGCCTGGCCTGCACACTCACAGACTCGGACACCTCACTCTCCAGAGCAGTCAGGTTCTCCTGTAACATGGCCTTCTCCAGCAGGGCGTCGGTCAGGCTCAGGTTGGTCAGCTGGATGTCCTGAAGGATGTGCTCTATCTGCAGCTGTAGTCTGCTTTGGTTCTCCCGGCTCTGCTTCAgctctctctccacagcctGCAGATCCTTCGCCTTCATTACTCTCGCCCCCTCTAACTTCTCCTCCAGCGCCTGTATCTCTCGCTGGCAGCCCTCCAGCCCCGCCCAGGCGGGCCATGAAgcccacaccaccaccaccaccagagACACCATGGACCACAGGACCAGCAGTGCCACTGCCCAGTTGCAGGAGGACCGCCGGCTGGACATGGTTCTGACTGCACTTGGGGACCG
>TU190105
taaaacatCAAGTGTGTTTCCTGTGAATTATAGGTGATCATAAGCACAAGAGTGAGCTGAGTGACTGTGTAATTGTGAACAGCAGAACGTCAGaaatacacaaatattatattctataaaacacatttgtaGCTCAAAAATGTTCTATATGCCGTGGTTTAAAGGTTATAATtctgatatataaaaatatgacatGCATTAGAGTAAATGTTGGGTAATGATCAGGAGAGTCTGGGTCACTCCTGAACCGCACAGCTCTCTctgcaacacaaacacagaatagCAGAATGAATACAGCACTGAGCGGGGTTTAGGACACAACTGTAATCTCCAACAATTCATATCCAAAATCCAAACAAACTAAAAGTTCTCTCAGGTCACTCACAGGTGTTTGTGAAAGTATTTACTCTTTGATTCACAGGCTTTTCTTTTACTGTCTGCTGCCACCTGCTGACTATGGGACGCATCACGCAGCGCCATGCAGGAGTCCAGCTGGTGCTCCTCACTGGTCAGGTTCACCTGCAGGGCGAAGATTTCAGCtggacaaacacacaaatatataaataaattacacaatataacaTTACTATGGTTGTGCAACACCTGTTTCTGTGGATACACTTCATGACCAAACATATGTGAACAGTGACACAATCTTCATAATTTGGGCTCCTTATATGATTTTGAAATGTAATTGAAGACTagactttcaggtttaattcaaaaagaaaaaaaaactaacaccATCTAACTAAGTGAGATTAATCCCCAGGAAATAGGTTTATCAGTATCTAAATCTACCATACAGAGGGTTCACCACAAGgttcaaattaataataaaaaggccTGATTATACTTCTAAATAAGCCAGCTCAACTCTGGAACAGTaaaaaacagGTCACCTCAGTACATAGGCAAAAGACATGCCCTGGGCCTGATCAGGGAAGGCAGGCACCGACACCCAACCACCAATAGACTACACCTATTTTCAGGGATACACTGCACTCATTTTCATTGTTGCAAGGCTAGGCTACATTCATTTTCATGGTTGAAACTAAACCCAGAGGCTCATATTCCGAGTGCAGATACACCCACCTTCTCCAGCAGGGCGTCGGTCAGGCTCAGGTTGGTCAGCTGGATGTCCTGAAGGATGTGCTCTATCTGCAGCTGTAGTCTGCTTTGGTTCTCCCGGCTCTGCTTCAgctctctctccacagcctGCAGATCCTTCGCCTTCATTACTCTCGCCCCCTCTAACTTCTCCTCCAGCGCCTGTATCTCTCGCTGGCAGCCCTCCAGCCCCGCCCAGGCGGGCCATGAAgcccacaccaccaccaccaccagagACACCATGGACCACAGGACCAGCAGTGCCACTGCCCAGTTGCAGGAGGACCGCCGGCTGGACATGGTTCTGACTGCACTTGGGGACCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190104 False 1288 TUCP 0.48 2 10398381 10399976
TU190105 True 1434 TUCP 0.45 2 10395520 10399976

Neighbor

gene id symbol gene type direction distance location
phc3 NA coding upstream 25530 10350896 ~ 10369990 (+)
gpr160 NA coding upstream 119300 10272014 ~ 10276220 (+)
sec62 sec62,LOC107738178,LOC102781860 coding upstream 149518 10235722 ~ 10246002 (+)
samd7 samd7 coding upstream 161260 10219573 ~ 10234260 (+)
LOC111194303 NA coding upstream 183190 10190811 ~ 10212330 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding downstream 85746 10485722 ~ 10524437 (+)
LOC103039831 ubtfl,LOC108267581 coding downstream 131015 10530991 ~ 10552601 (+)
LOC103042199 LOC108437251,LOC108267580 coding downstream 158481 10558457 ~ 10680089 (+)
LOC103039003 fam49b,LOC108437217,LOC108267758,LOC107713994,LOC106592588,LOC107657432,LOC107718035,LOC107556887,LOC107701021 coding downstream 283612 10683588 ~ 10750675 (+)
LOC103038209 amph coding downstream 805574 11205550 ~ 11308230 (+)
G140401 NA non-coding upstream 1260 10391391 ~ 10394260 (+)
G140392 NA non-coding upstream 21351 10371452 ~ 10374169 (+)
G140391 NA non-coding upstream 34143 10360991 ~ 10361377 (+)
G140341 prkci,LOC107659412,LOC107558824 non-coding upstream 60451 10332828 ~ 10335069 (+)
G140331 NA non-coding upstream 87805 10307420 ~ 10307715 (+)
G140404 dapk3,LOC103038916,LOC106600507 non-coding downstream 13568 10413544 ~ 10416765 (+)
G140405 dapk3,LOC103038916,LOC107706382,LOC107738169 non-coding downstream 17223 10417199 ~ 10419032 (+)
G140418 NA non-coding downstream 64021 10463997 ~ 10464684 (+)
G140444 NA non-coding downstream 72747 10472723 ~ 10472990 (+)
G140457 NA non-coding downstream 127789 10527765 ~ 10534780 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other upstream 50049 10311100 ~ 10345471 (+)
G140262 NA other upstream 401454 9993586 ~ 9994066 (+)
G140258 NA other upstream 405224 9989918 ~ 9990296 (+)
G140103 NA other upstream 650165 9743698 ~ 9745355 (+)
G140062 NA other upstream 854710 9539775 ~ 9540810 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 27290 10427266 ~ 10444540 (+)
G140520 NA other downstream 398569 10798545 ~ 10798891 (+)
G140659 NA other downstream 980122 11380098 ~ 11383505 (+)
LOC111194237 NA other downstream 1055509 11455485 ~ 11478740 (+)
G140931 NA other downstream 1838012 12237988 ~ 12240625 (+)

Expression


Co-expression Network