G140457


Basic Information

Item Value
gene id G140457
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10527765 ~ 10534780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190172
attcactgtatacCAACTCTTCCTCTTCACCTACCTATAACTTTACAAATTATGCTTTTAAACTCAAGACATTCAAGTACTGAAAGATATTCCAAGTGACTCtatctcataaagctgactgggaaaatacagccaagatgtgcaaaactgacaTCTAAGGAAAAGGTGCTATTTTTAAAgaatctgtaaaataaaatgtattctagTTTAACACTTTTGGCTTACTAAattattccatatgttttcaCAGTTTgtttgactttagtattaatctatagGTCATAATTTTGaatgtttccaaacttttggctggtactgtaaaattctttttaaataaaccaaagtcAATTCTGTTTAACCATCTGGAAATTACCCCTTTGTTGATCTTTCATTTGTTATAAGTAAATTTAAAAGAGCACTGAGTGTTATTTTCTGGTGGTTTTTAGTGCTGACAAAATCTcagacaactttttttttctcaccacAACCCGAGATATGTTCACATTAGCAGCACAGCTGATATAATTTCtgtaacaagcataaaaactaCTCACCTGGCTACCTGTTctttacggtggccgagaaagcccagcgcagtgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190172 True 601 lncRNA 0.33 2 10527765 10534780

Neighbor

gene id symbol gene type direction distance location
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding upstream 3328 10485722 ~ 10524437 (+)
phc3 NA coding upstream 157775 10350896 ~ 10369990 (+)
gpr160 NA coding upstream 251545 10272014 ~ 10276220 (+)
sec62 sec62,LOC107738178,LOC102781860 coding upstream 281763 10235722 ~ 10246002 (+)
samd7 samd7 coding upstream 293505 10219573 ~ 10234260 (+)
LOC103042199 LOC108437251,LOC108267580 coding downstream 23677 10558457 ~ 10680089 (+)
LOC103039003 fam49b,LOC108437217,LOC108267758,LOC107713994,LOC106592588,LOC107657432,LOC107718035,LOC107556887,LOC107701021 coding downstream 148808 10683588 ~ 10750675 (+)
LOC103038209 amph coding downstream 670770 11205550 ~ 11308230 (+)
LOC111194305 NA coding downstream 778753 11313533 ~ 11314374 (+)
LOC103038536 NA coding downstream 784990 11319770 ~ 11330660 (+)
G140444 NA non-coding upstream 54775 10472723 ~ 10472990 (+)
G140418 NA non-coding upstream 63081 10463997 ~ 10464684 (+)
G140394 NA non-coding upstream 82038 10376247 ~ 10445727 (+)
G140460 NA non-coding downstream 38388 10573168 ~ 10575778 (+)
G140466 NA non-coding downstream 203937 10738717 ~ 10738997 (+)
G140515 NA non-coding downstream 221124 10755904 ~ 10756240 (+)
G140516 NA non-coding downstream 223475 10758255 ~ 10758470 (+)
G140543 NA non-coding downstream 414475 10949255 ~ 10949485 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 83225 10427266 ~ 10444540 (+)
G140402 NA other upstream 127789 10395520 ~ 10399976 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other upstream 182294 10311100 ~ 10345471 (+)
G140262 NA other upstream 533699 9993586 ~ 9994066 (+)
G140258 NA other upstream 537469 9989918 ~ 9990296 (+)
G140520 NA other downstream 263765 10798545 ~ 10798891 (+)
G140659 NA other downstream 845318 11380098 ~ 11383505 (+)
LOC111194237 NA other downstream 920705 11455485 ~ 11478740 (+)
G140931 NA other downstream 1703208 12237988 ~ 12240625 (+)
G140930 NA other downstream 1844216 12378996 ~ 12381554 (+)

Expression


Co-expression Network