G140515


Basic Information

Item Value
gene id G140515
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10755904 ~ 10756240 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190261
aattaaggacgttaagctctttttagctgctccggtttttgtggtgctgctgctttctcttttagagcttagattctctgcccgaacccgacctgacccgaggaccgacccgaaatcaggctcctatttttattttatataaagctctggtgtgataatcacaatgttgctaagtaaccaattattattgttcactaaagcgaacgaaatagcgaaaactgaaagtgaaaaaacatttgtgttaactgaatctaataaaaacggtaattaaaaggaaaaaacataactatctcgaactgtattttgtgtttataaaactaactaaaacgaactgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190261 True 337 lncRNA 0.35 1 10755904 10756240

Neighbor

gene id symbol gene type direction distance location
LOC103039003 fam49b,LOC108437217,LOC108267758,LOC107713994,LOC106592588,LOC107657432,LOC107718035,LOC107556887,LOC107701021 coding upstream 5229 10683588 ~ 10750675 (+)
LOC103042199 LOC108437251,LOC108267580 coding upstream 75815 10558457 ~ 10680089 (+)
LOC103039831 ubtfl,LOC108267581 coding upstream 203303 10530991 ~ 10552601 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding upstream 231467 10485722 ~ 10524437 (+)
phc3 NA coding upstream 385914 10350896 ~ 10369990 (+)
LOC103038209 amph coding downstream 449310 11205550 ~ 11308230 (+)
LOC111194305 NA coding downstream 557293 11313533 ~ 11314374 (+)
LOC103038536 NA coding downstream 563530 11319770 ~ 11330660 (+)
LOC103039058 NA coding downstream 581721 11337961 ~ 11338482 (+)
LOC103039371 NA coding downstream 588351 11344591 ~ 11371098 (+)
G140466 NA non-coding upstream 16907 10738717 ~ 10738997 (+)
G140460 NA non-coding upstream 180126 10573168 ~ 10575778 (+)
G140457 NA non-coding upstream 221124 10527765 ~ 10534780 (+)
G140444 NA non-coding upstream 282914 10472723 ~ 10472990 (+)
G140418 NA non-coding upstream 291220 10463997 ~ 10464684 (+)
G140516 NA non-coding downstream 2015 10758255 ~ 10758470 (+)
G140543 NA non-coding downstream 193015 10949255 ~ 10949485 (+)
G140550 NA non-coding downstream 222334 10978574 ~ 10979090 (+)
G140556 NA non-coding downstream 247577 11003817 ~ 11004526 (+)
G140563 NA non-coding downstream 371048 11127288 ~ 11128909 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 311364 10427266 ~ 10444540 (+)
G140402 NA other upstream 355928 10395520 ~ 10399976 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other upstream 410433 10311100 ~ 10345471 (+)
G140262 NA other upstream 761838 9993586 ~ 9994066 (+)
G140258 NA other upstream 765608 9989918 ~ 9990296 (+)
G140520 NA other downstream 42305 10798545 ~ 10798891 (+)
G140659 NA other downstream 623858 11380098 ~ 11383505 (+)
LOC111194237 NA other downstream 699245 11455485 ~ 11478740 (+)
G140931 NA other downstream 1481748 12237988 ~ 12240625 (+)
G140930 NA other downstream 1622756 12378996 ~ 12381554 (+)

Expression


Co-expression Network