G140520


Basic Information

Item Value
gene id G140520
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10798545 ~ 10798891 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190266
cttcatctctccctcacccacctggagaagaaggacacttacgtcagaatgctgtttatagacttcagttcagcattcaacaccatcatcccacagaacctcaccaggaagctaagctcgctcggcctcaacacccccctctgcaactggatcctggactttctgacggggagaccccagtcagtctggttcgggggcagcacctccagcaccatcacactgaacacgggagccccccagggcagtgtcctgagtcctctgctgttcaccctgctgactcatgactgtgctgcaaaacacagttctaacagctttatcaagttcgccgatgatacaaccgtgctggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190266 True 347 TUCP 0.55 1 10798545 10798891

Neighbor

gene id symbol gene type direction distance location
LOC103039003 fam49b,LOC108437217,LOC108267758,LOC107713994,LOC106592588,LOC107657432,LOC107718035,LOC107556887,LOC107701021 coding upstream 47870 10683588 ~ 10750675 (+)
LOC103042199 LOC108437251,LOC108267580 coding upstream 118456 10558457 ~ 10680089 (+)
LOC103039831 ubtfl,LOC108267581 coding upstream 245944 10530991 ~ 10552601 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding upstream 274108 10485722 ~ 10524437 (+)
phc3 NA coding upstream 428555 10350896 ~ 10369990 (+)
LOC103038209 amph coding downstream 406659 11205550 ~ 11308230 (+)
LOC111194305 NA coding downstream 514642 11313533 ~ 11314374 (+)
LOC103038536 NA coding downstream 520879 11319770 ~ 11330660 (+)
LOC103039058 NA coding downstream 539070 11337961 ~ 11338482 (+)
LOC103039371 NA coding downstream 545700 11344591 ~ 11371098 (+)
G140516 NA non-coding upstream 40075 10758255 ~ 10758470 (+)
G140515 NA non-coding upstream 42305 10755904 ~ 10756240 (+)
G140466 NA non-coding upstream 59548 10738717 ~ 10738997 (+)
G140460 NA non-coding upstream 222767 10573168 ~ 10575778 (+)
G140457 NA non-coding upstream 263765 10527765 ~ 10534780 (+)
G140543 NA non-coding downstream 150364 10949255 ~ 10949485 (+)
G140550 NA non-coding downstream 179683 10978574 ~ 10979090 (+)
G140556 NA non-coding downstream 204926 11003817 ~ 11004526 (+)
G140563 NA non-coding downstream 328397 11127288 ~ 11128909 (+)
G140670 NA non-coding downstream 644950 11443841 ~ 11444206 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 354005 10427266 ~ 10444540 (+)
G140402 NA other upstream 398569 10395520 ~ 10399976 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other upstream 453074 10311100 ~ 10345471 (+)
G140262 NA other upstream 804479 9993586 ~ 9994066 (+)
G140258 NA other upstream 808249 9989918 ~ 9990296 (+)
G140659 NA other downstream 581207 11380098 ~ 11383505 (+)
LOC111194237 NA other downstream 656594 11455485 ~ 11478740 (+)
G140931 NA other downstream 1439097 12237988 ~ 12240625 (+)
G140930 NA other downstream 1580105 12378996 ~ 12381554 (+)
G141086 NA other downstream 1942582 12741473 ~ 12743453 (+)

Expression


Co-expression Network