G140563


Basic Information

Item Value
gene id G140563
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11127288 ~ 11128909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190315
AGCATTTTGAACCACATGGTCACCCTTTAATCACTGTAGAATAAAGCAGTCTTTGTCTTTGTTagacagtaaaaaacaaaagtctGAACTTTTATTTGTACTGTGTGTTTCCACTGCTTTGAATCAAGCAGCAACATTTAGTACAAAAGAAAGAGCTTGGCCAAACTTCGCTCTCCAGCTAAATCAAAACGAACAGATTCTGTAGACATCATAAATACTTGTGCAGTGTCATTGATAAACTCGTACTACAGGATAGAAGAAGGATCAGCAACTGGACTTCAAGATACTCTTTATATGCATTGTTCTCAATAATATACATCCTGAGATACAAAAAAATGCCCAAATTAAATAACTtccgtttttttctttttcctaaaAATACTGCAACAGACGTgatcattaaaacacacacacaccaatattATCATCAATCCCCTTCCCACCGTTTACAGACTTCACAATGTCACCCATACAAAAAAACGGACTAGATTTTATACACCTATGACGTAGAATGTTACAAAAATAGTGCCGGTAAAAATGGCCCACCAACTTCAACCAACTTTAGCACTCTGaggccactttttttttgtttgcatctagtcatatgattattattattattattattaatattattattattcatctaATTCACactcaaatctgataaaaatctgtaatatatatatatatttactctctcttttcGAACAATTCTCTGATAAAAGATTTCACTGGTCCTTCGGCAGCTGTGCAGCAACATTTGGGTTGAGAGGTTCCTGCTCCCAGAACTTCGTATTgtccttttcctctctttctgcagTAAATTCAAgttcaaaaaaacaaagaaaaacaacaacaatgaaAGATATGTACATTCCAAGCTGATTAAGTCACTGCTTTGTTTAGtatttgctttctctctttctttttctgtaaagGTTGGTTTAGTGTAAGGACGGCAGCACAGTAGAGCTCAGAGGACGAGAGTTAAAAGAAGCAAGAGTTAGCGTGCGACGGTTGCTTTGGTACAAATCGATCATCATCTTCGCTGTCCTGCACCCGAAGGTTCCTGATGACAGCTGGAAGAcaataagCACGTCCACGTGGAATTCTTTCAGAACCAGCAGGGACGCACAGGAAAGCAGTCCTGTGCCTTCGTCACGGACGTCCCGCAAACGCCcgcctctcactcttcctcctcatcatcGTCATTCTCCTCCGTCAGTTCAACGATGTCGTCCATCCGGCCAGTTCGGACTTCGTTCATGGGGGCGGAGTCCTCGCCTTCGTTGGCCACCTCTCCGTCACagtctttcttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190315 True 1324 lncRNA 0.40 2 11127288 11128909

Neighbor

gene id symbol gene type direction distance location
LOC103039003 fam49b,LOC108437217,LOC108267758,LOC107713994,LOC106592588,LOC107657432,LOC107718035,LOC107556887,LOC107701021 coding upstream 376613 10683588 ~ 10750675 (+)
LOC103042199 LOC108437251,LOC108267580 coding upstream 447199 10558457 ~ 10680089 (+)
LOC103039831 ubtfl,LOC108267581 coding upstream 574687 10530991 ~ 10552601 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding upstream 602851 10485722 ~ 10524437 (+)
phc3 NA coding upstream 757298 10350896 ~ 10369990 (+)
LOC103038209 amph coding downstream 76641 11205550 ~ 11308230 (+)
LOC111194305 NA coding downstream 184624 11313533 ~ 11314374 (+)
LOC103038536 NA coding downstream 190861 11319770 ~ 11330660 (+)
LOC103039058 NA coding downstream 209052 11337961 ~ 11338482 (+)
LOC103039371 NA coding downstream 215682 11344591 ~ 11371098 (+)
G140556 NA non-coding upstream 122762 11003817 ~ 11004526 (+)
G140550 NA non-coding upstream 148198 10978574 ~ 10979090 (+)
G140543 NA non-coding upstream 177803 10949255 ~ 10949485 (+)
G140516 NA non-coding upstream 368818 10758255 ~ 10758470 (+)
G140515 NA non-coding upstream 371048 10755904 ~ 10756240 (+)
G140670 NA non-coding downstream 314932 11443841 ~ 11444206 (+)
G140644 NA non-coding downstream 323110 11452019 ~ 11455807 (+)
G140671 NA non-coding downstream 325661 11454570 ~ 11454829 (+)
G140676 epdr1,LOC108437243,LOC107664036,LOC107558964,LOC107713986,LOC108267170 non-coding downstream 372147 11501056 ~ 11520012 (+)
G140637 NA non-coding downstream 377755 11506664 ~ 11513421 (+)
G140520 NA other upstream 328397 10798545 ~ 10798891 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 682748 10427266 ~ 10444540 (+)
G140402 NA other upstream 727312 10395520 ~ 10399976 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other upstream 781817 10311100 ~ 10345471 (+)
G140262 NA other upstream 1133222 9993586 ~ 9994066 (+)
G140659 NA other downstream 251189 11380098 ~ 11383505 (+)
LOC111194237 NA other downstream 326576 11455485 ~ 11478740 (+)
G140931 NA other downstream 1109079 12237988 ~ 12240625 (+)
G140930 NA other downstream 1250087 12378996 ~ 12381554 (+)
G141086 NA other downstream 1612564 12741473 ~ 12743453 (+)

Expression


Co-expression Network