G140666


Basic Information

Item Value
gene id G140666
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11532819 ~ 11535275 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190468
CTCGTCCACCTgggtatttatattttattactgaaAATGATAAGACAGTGCTGTTGACAATACTGTATcattctcttttcatttttaatgtattgatGGTCAATAAGGGCTGGCTGGTAAACCGCGGGAGAAAACCAGGAGCAGGCTTGCGTCTTTCAGCTGAATGAGTCCTTAAAGGCCTGGGCTTGTATCGATCAGTCGTTCCAGAGTAAGAGCTCTGACAAGGGAagagatttttttccccctcttagttcatttttttcagaaggGGAAGGAGTGTCCAACTTTAGACCAGTTTGGTTCTTTTCTTACACTCTTAAAACAAAAGGATGCTTTAGATAGTTCCTTGAGGGATGCCACAAAAGAACCATTGACTACTGTTTGGAAAAGAAGTGGGTATCCAGATTTAGTCTTAGAGACTCTGTCCAGGGCAGTTCTGTGATTGTCCTTCCAAGATATACATGTACTTTTAAAGGGTGCTTCAGATGGCTCCTTGAGAGATGCCACAAAATAACCCTTTGCTACTGTTTGGAAAATAAGGGAGTGTCCAGATTTAGTTTGAGAGAGACTTTATCCAGGACAGCTTGTTGCATTTCCTGCcaagatatacatatatttttaaaacaacaggTGGCTTTAGATGGTTCCTTGAGGGATACCACAAAAGAACCCTTGAGAACCCTATTGTTTGGAAAAGgagtttagatttagatttagtcCTAGCAGAGACTTTGTCCAGGACAGTTTGGTGCTTTTCCTGACAAGATGTACCTACACTCTTGAAAACAAAAGGGTGCTTCAGATGGTTCCTTAAGGAATGCCACAAAAAACCCTTGACTATTGTTTGAAAAATAAGTGGGTGTCCCGATTTAGAGTCTTAGAGACTTTGTCCAGGACAGTTTGTTGCATTTCCTGCCAAGATGTATGCATTTTTTTGAGGGATGCCACAATAGAACCCTTTGCTACTGTTTGGAAAAAGAGATGGTGTCCAGAATGGGTCCTGAAGTGACTTTCTGTACAGCACAGTTATAGCACAGGTGATTTTCCTGCCAGGAACATTACCTAACTGTACCTAAAATAATCGGGTGCTGCTTTAGATGGTTCCATGGGAGAtgccatagaaaaaaaatatatatatatatgtttataattaaGATGTCTTGAAAAAGTCTGAAGACTAATCGCTTGTTGCTAATGTtccttaataatataataatttaaaaatgctcAATAACAAACATGGCTCTAAATGGAGCCAGATGGTCTTTTAAAGTTCTTCTATGGCAGGGTTCTTCAATCCTAGCCGTGACACCCCCCTAACCTGCAaatttgatgattttggcttctCCTTCTATTAACACACCTCATTTAActaattaacacattaacaagTCATGTAGGAGTTGCAGTGGGTGTGGTAAAGCTGGTAATTGACTAAAATGAGCTGGGCAGGGGTGTGCCAAGACCCGGATCAGGACTGGGGAACAAAAAGCAAGAAAACTGGAATATTTCCTTGCTTAAACACTTAGCAAATTGCTCTGGACACTTCTAGTTTCTGACAAATGAATGAACTGAATAGATATGAGATAAGGAGTGTCCATCTGAACACCTCAGCTGTTTAAAGAGTGAGGGGAGGGGGAAAGGTGCAATTGGACTTCATCAAGCTCCAGCTTGGCTGGAATGAAAACCTATAGGCTTAAAAGTCTCTAGGGGGTAAGACTGGACACTCCTGCCCTAGATCAGCACTCTCACTCTGAGACGACTGAACATACAGACCCAGGCTCCTGTCAGAGAGCCTTACTGTACAGTGCAAGTGTGAGTGGTGAATTGTCTCGTATGAGGAAAGTTAGTCAGAGACAGGGGGACAGAGGGACTCCAGGCTGATGAGAAGAGCCGTAGACATCAATACAGatacaaaccaaaaaaatgaaaataaaaagtgtccAAACATCTGCTGTGCTGCTGGCAGAGGGTGGGTGCGCTTGCACAAACGAGGGCTTTAACTGATGTATATAGCTCACACTAACTCTCTATGCTAAATACCACCACTAAGGATGAGTCCAGCAGTGTTAGACGGcatgtctgtcttttttttttcttcttcttcttcttcttctttatcgactttttttttgttaatcttttcctttttttttccttttctttttcaagtAACTAAAAATGTTCCACTCCGCATGTTAATATAATCAattcaaaaacaaaactgaGGGAGGGTTTTTATATGGTAACAAGTACACAAGccaacagctttaaaaacagcagGGTGATACTGTACTGGGACCCTTTCGTGCTCACTTTAGCCAGCTTTCAATCAAGAACAAATATATCATATGCAAGTTTAATGATAACATTAATTATAATCAGAATAATCTGCCTCATGCCTTGTAAACTAGGAAACAATCAGAGCCTGCA
>TU190469
CTCGTCCACCTgggtatttatattttattactgaaAATGATAAGACAGTGCTGTTGACAATACTGTATcattctcttttcatttttaatgtattgatGGTCAATAAGGGCTGGCTGGTAAACCGCGGGAGAAAACCAGGAGCAGGCTTGCGTCTTTCAGCTGAATGAGTCCTTAAAGGCCTGGGCTTGTATCGATCAGTCGTTCCAGAGTAAGAGCTCTGACAAGGGAagagatttttttccccctcttagttcatttttttcagaaggGGAAGGAGTGTCCAACTTTAGACCAGTTTGGTTCTTTTCTTACACTCTTAAAACAAAAGGATGCTTTAGATAGTTCCTTGAGGGATGCCACAAAAGAACCATTGACTACTGTTTGGAAAAGAAGTGGGTATCCAGATTTAGTCTTAGAGAGTCTTAGAGACTTTGTCCAGGACAGTTTGTTGCATTTCCTGCCAAGATGTATGCATTTTTTTGAGGGATGCCACAATAGAACCCTTTGCTACTGTTTGGAAAAAGAGATGGTGTCCAGAATGGGTCCTGAAGTGACTTTCTGTACAGCACAGTTATAGCACAGGTGATTTTCCTGCCAGGAACATTACCTAACTGTACCTAAAATAATCGGGTGCTGCTTTAGATGGTTCCATGGGAGAtgccatagaaaaaaaaatatatatatatgtttataattaaGATGTCTTGAAAAAGTCTGAAGACTAATCGCTTGTTGCTAATGTtccttaataatataataatttaaaaatgctcAATAACAAACATGGCTCTAAATGGAGCCAGATGGTCTTTTAAAGTTCTTCTATGGCAGGGTTCTTCAATCCTAGCCGTGACACCCCCCTAACCTGCAaatttgatgattttggcttctCCTTCTATTAACACACCTCATTTAActaattaacacattaacaagTCATGTAGGAGTTGCAGTGGGTGTGGTAAAGCTGGTAATTGACTAAAATGAGCTGGGCAGGGGTGTGCCAAGACCCGGATCAGGACTGGGGAACAAAAAGCAAGAAAACTGGAATATTTCCTTGCTTAAACACTTAGCAAATTGCTCTGGACACTTCTAGTTTCTGACAAATGAATGAACTGAATAGATATGAGATAAGGAGTGTCCATCTGAACACCTCAGCTGTTTAAAGAGTGAGGGGAGGGGGAAAGGTGCAATTGGACTTCATCAAGCTCCAGCTTGGCTGGAATGAAAACCTATAGGCTTAAAAGTCTCTAGGGGGTAAGACTGGACACTCCTGCCCTAGATCAGCACTCTCACTCTGAGACGACTGAACATACAGACCCAGGCTCCTGTCAGAGAGCCTTACTGTACAGTGCAAGTGTGAGTGGTGAATTGTCTCGTATGAGGAAAGTTAGTCAGAGACAGGGGGACAGAGGGACTCCAGGCTGATGAGAAGAGCCGTAGACATCAATACAGatacaaaccaaaaaaatgaaaataaaaagtgtccAAACATCTGCTGTGCTGCTGGCAGAGGGTGGGTGCGCTTGCACAAACGAGGGCTTTAACTGATGTATATAGCTCACACTAACTCTCTATGCTAAATACCACCACTAAGGATGAGTCCAGCAGTGTTAGACGGcatgtctgtcttttttttttcttcttcttcttcttcttctttatcgactttttttttgttaatcttttcctttttttttccttttctttttcaagtAACTAAAAATGTTCCACTCCGCATGTTAATATAATCAattcaaaaacaaaactgaGGGAGGGTTTTTATATGGTAACAAGTACACAAGccaacagctttaaaaacagcagGGTGATACTGTACTGGGACCCTTTCGTGCTCACTTTAGCCAGCTTTCAATCAAGAACAAATATATCATATGCAAGTTTAATGATAACATTAATTATAATCAGAATAATCTGCCTCATGCCTTGTAAACTAGGAAACAATCAGAGCCTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190468 True 2433 lncRNA 0.40 2 11532819 11535275
TU190469 False 1977 lncRNA 0.40 3 11532819 11535275

Neighbor

gene id symbol gene type direction distance location
nol7 NA coding upstream 1912 11521440 ~ 11530907 (+)
LOC103022687 NA coding upstream 39113 11481749 ~ 11493706 (+)
LOC111194307 NA coding upstream 80213 11451935 ~ 11452606 (+)
LOC111194236 NA coding upstream 81876 11450374 ~ 11450943 (+)
LOC103030487 NA coding upstream 93866 11438421 ~ 11438953 (+)
retreg1 fam134b coding downstream 40837 11576112 ~ 11607386 (+)
LOC103030795 NA coding downstream 108761 11644036 ~ 11655408 (+)
LOC103026935 ralyl coding downstream 137333 11672608 ~ 11754085 (+)
lrrcc1 lrrcc1 coding downstream 220386 11755661 ~ 11781589 (+)
e2f5 LOC108437220,LOC108268108 coding downstream 248802 11784077 ~ 11795844 (+)
G140676 epdr1,LOC108437243,LOC107664036,LOC107558964,LOC107713986,LOC108267170 non-coding upstream 12807 11501056 ~ 11520012 (+)
G140637 NA non-coding upstream 19398 11506664 ~ 11513421 (+)
G140644 NA non-coding upstream 77012 11452019 ~ 11455807 (+)
G140671 NA non-coding upstream 77990 11454570 ~ 11454829 (+)
G140670 NA non-coding upstream 88613 11443841 ~ 11444206 (+)
G140688 NA non-coding downstream 34726 11570001 ~ 11570202 (+)
G140695 NA non-coding downstream 94141 11629416 ~ 11635600 (+)
G140791 NA non-coding downstream 281291 11816566 ~ 11819156 (+)
G140795 NA non-coding downstream 300211 11835486 ~ 11836832 (+)
G140796 NA non-coding downstream 301898 11837173 ~ 11841898 (+)
LOC111194237 NA other upstream 54079 11455485 ~ 11478740 (+)
G140659 NA other upstream 149314 11380098 ~ 11383505 (+)
G140520 NA other upstream 733928 10798545 ~ 10798891 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 1088279 10427266 ~ 10444540 (+)
G140402 NA other upstream 1132843 10395520 ~ 10399976 (+)
G140931 NA other downstream 702713 12237988 ~ 12240625 (+)
G140930 NA other downstream 843721 12378996 ~ 12381554 (+)
G141086 NA other downstream 1206198 12741473 ~ 12743453 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other downstream 1307523 12842798 ~ 12860327 (+)
G141361 tcea1 other downstream 2320328 13855603 ~ 13858605 (+)

Expression


Co-expression Network