G140708


Basic Information

Item Value
gene id G140708
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11328689 ~ 11488301 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190531
CTTTAGGAATAGTGACCTTCAGGTCATTGTTCGTTGCATCTATGCTGCTGTCGTGTTGGACGGAGCAGGTGAAGGTGTTAGATCGTGCTTTCTGTTGGTCTATGATGAGCATGCTGGTCACTCTGACCTCCTCCTCGTCTctctgctccagcagctcctctgTGTCTGACAGCTTCACCTCATTCCCAGCTTGATCCTTCCACATGAACTTCACCAGGTCTGGATACATGCCTCTGGCCTGACACAGCAGCACACTCCTCCCATCTCCGGATCGAGACACTGGGAACGCCGACAGTTTAGGAGGCTCCGTTTTTTCACCTGTTTCTACACACAACGTTTCAAACACAACCTGTCTGATTTGATCTGCATTAAAACTTTTACTGTAAGCTTTTTCCATCAGACATTTCTTACTGGACTGtataaaaagataataaaaaaatgctccaAAGCCCTGTATTTCGTCTATCTATTCATAACATACACAAAATTGAAATCAGTACTATGTATAATGAATCTAACAAACTCCCTTTAAGACCTTATGAACACATTCAAAATATGTTATAATGCAATTATAAGGCATTACAAAtatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190531 True 591 lncRNA 0.42 3 11328689 11488301

Neighbor

gene id symbol gene type direction distance location
LOC103037030 NA coding downstream 130916 11184130 ~ 11197773 (-)
LOC103041893 ankh,ankhb,LOC108437249,LOC107713990,LOC107657429 coding downstream 151835 11127281 ~ 11176854 (-)
LOC103038167 LOC108437250 coding downstream 215295 11110129 ~ 11113394 (-)
LOC103040378 NA coding downstream 862111 10447884 ~ 10466578 (-)
LOC103038916 dapk3,LOC103038916 coding downstream 903194 10413599 ~ 10425495 (-)
stard3nl stard3nl coding upstream 9754 11498055 ~ 11513466 (-)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108437243,LOC108267170,LOC107713986 coding upstream 26622 11514923 ~ 11520037 (-)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding upstream 44527 11532828 ~ 11567921 (-)
rnf182 rnf182 coding upstream 79752 11568053 ~ 11573213 (-)
trnad-guc_16 NA coding upstream 267227 11755528 ~ 11755599 (-)
G140618 NA non-coding downstream 139021 11115338 ~ 11189668 (-)
LOC103038501 NA non-coding downstream 225351 10995257 ~ 11103338 (-)
G140609 NA non-coding downstream 257230 11070388 ~ 11071459 (-)
G140551 NA non-coding downstream 349605 10978751 ~ 10979084 (-)
G140542 NA non-coding downstream 412692 10915794 ~ 10915997 (-)
G140754 NA non-coding upstream 33159 11521460 ~ 11523962 (-)
G140798 NA non-coding upstream 200251 11688552 ~ 11692103 (-)
G140822 NA non-coding upstream 318531 11806832 ~ 11807230 (-)
G140823 NA non-coding upstream 328543 11816844 ~ 11818965 (-)
G140825 NA non-coding upstream 347208 11835509 ~ 11836832 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 813882 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 983191 10311097 ~ 10345498 (-)
G140342 NA other downstream 1225232 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 1614652 9697155 ~ 9714037 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 2617590 8671024 ~ 8711099 (-)
G140772 fam134b other upstream 117934 11606235 ~ 11610529 (-)
G140975 NA other upstream 685394 12173695 ~ 12174994 (-)
G141020 NA other upstream 860258 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 984503 12472804 ~ 12572147 (-)
G141220 NA other upstream 1827590 13315891 ~ 13316365 (-)

Expression


Co-expression Network