G140748


Basic Information

Item Value
gene id G140748
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11474957 ~ 11530810 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190582
agcaTGTACATTATTTAAAGCAAACATTTAACCAAAAATGTACAGAGGGGCTGTCTTTACTTCAGACAACAAAGAAaatctcctaaaaaaaaatccaactcaAGCCTAGCTAGTACTGATCTGTGGTGTTGAAAGGGTTAAGCTGGTCTTTGAGGTGGTAGgaaagctggtcatccaggGAAAACATAACACACATACTGGTCTGCTTAACAATACAGGCTTTTCAAATTTGTACCACTTAAACAATCaaactaaaacatataaaatgctGGCCAAGAGATAAATTACCTAACCGCATTTAACCGGTCTAGGAGTAAATTGTGTAAATGATAAAGATTCGATTTAACTAAAGCCGCtgctttaaaacaaaatgtaatatcTCCTTCACTTCAAGGACATAttgggtcagtttcccagacagggattaagcctagtccaaGACTAAATTCATCTTTCAATGCTAAATCTCTATTCAAAAATGATATGCAGTCCAAAACTAGGCCTAATACCCCTGTCTGCAAAACTAGTTAATAACTAATAGTTACAGCAATTTTCATACCAGCACTCAACTCAATTTAAATCAATCATAAACAAGATAAGATTACATAACTGTATTTTCAATAAGGCCTAGTATCAGAACACTATCCACTGTGACCATAATATAATACAACCAAAAATGtccaagtttttttgttttacaatgaCTTAAACTcaaattacacagttatttCACTATGAGGTGCTTCCACAGCCATAAGACCCCCTATAATGTTTGACTAAAGGGGATACATCccattaaatgatattaatacATGGTTTCATGTATTAATGTACATGGTATTcaagtttaatataaatcttatttttaaacaaagagCAAACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190582 True 884 lncRNA 0.33 2 11474957 11530810

Neighbor

gene id symbol gene type direction distance location
LOC111194197 NA coding downstream 86731 11386825 ~ 11388226 (-)
LOC103037030 NA coding downstream 277184 11184130 ~ 11197773 (-)
LOC103041893 ankh,ankhb,LOC108437249,LOC107713990,LOC107657429 coding downstream 298103 11127281 ~ 11176854 (-)
LOC103038167 LOC108437250 coding downstream 361563 11110129 ~ 11113394 (-)
LOC103040378 NA coding downstream 1008379 10447884 ~ 10466578 (-)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding upstream 2018 11532828 ~ 11567921 (-)
rnf182 rnf182 coding upstream 37243 11568053 ~ 11573213 (-)
trnad-guc_16 NA coding upstream 224718 11755528 ~ 11755599 (-)
LOC103027519 NA coding upstream 289049 11819859 ~ 11832264 (-)
LOC103031742 NA coding upstream 414616 11945426 ~ 11968401 (-)
G140735 NA non-coding downstream 49830 11424165 ~ 11425127 (-)
G140725 NA non-coding downstream 71075 11378307 ~ 11403882 (-)
G140618 NA non-coding downstream 285289 11115338 ~ 11189668 (-)
LOC103038501 NA non-coding downstream 371619 10995257 ~ 11103338 (-)
G140609 NA non-coding downstream 403498 11070388 ~ 11071459 (-)
G140798 NA non-coding upstream 157742 11688552 ~ 11692103 (-)
G140822 NA non-coding upstream 276022 11806832 ~ 11807230 (-)
G140823 NA non-coding upstream 286034 11816844 ~ 11818965 (-)
G140825 NA non-coding upstream 304699 11835509 ~ 11836832 (-)
G140815 NA non-coding upstream 306367 11837177 ~ 11843218 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 960150 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 1129459 10311097 ~ 10345498 (-)
G140342 NA other downstream 1371500 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 1760920 9697155 ~ 9714037 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 2763858 8671024 ~ 8711099 (-)
G140772 fam134b other upstream 75425 11606235 ~ 11610529 (-)
G140975 NA other upstream 642885 12173695 ~ 12174994 (-)
G141020 NA other upstream 817749 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 941994 12472804 ~ 12572147 (-)
G141220 NA other upstream 1785081 13315891 ~ 13316365 (-)

Expression


Co-expression Network