G140791


Basic Information

Item Value
gene id G140791
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11816566 ~ 11819156 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190640
aaaataactcaacacacagccattaatgtcttaACCGCTAGCAATAAAAATGAGTATAgctttattgtctttatttattacacttacaatataaaaacaaaacataaaaagaaagaaaacattgtgaaaaaaaatcagatacatCTCTGATTTAggaaaatatgtaaaaagtgACTCAAACTAACTGTAAAAAGATCACATTTGACATGTCTACACATGTCTGAAAAAAACAGATCTGTGTTACATTAAAGCAAACAAATTTGATTAGAATCACTTTCATCtggtaatataaatataatatatacctcAGTTAATGAGTGAAAAATAGGAATATGACAGAAAATCCTGTTCAGAAATGTGTCAATTATTTAGAGACTACGCCATCTGCATTGGATCATTATTTCTTTATATGTACTAAAGTGTACTTCAGTCTCGCTCATAAAAGATCCTCTCTGCTGTgattttaaatgcctttttatGTATATCGGAATTGTTAGTGTTAGCATTGAACACTGACATCTgacaatatatgtataatattgtacCACAGTTAGtcccgaccctgcaatgtgattggttaagaggcgttctatgaatgccgttatcagccggtaatgcactgtaactgaagctcttcatgtattactccaccacataaacaggtaacctagcaacgatgcagcgcttacaagccaaacagcgcagcagtggaactattttgactgttttttataaccaaacagattgtattttctcgtcctctttaactcaaaatctttcaataaagaGCAATTGGCACTaataatattacatgttatagcatgaaccttgagtgtattaatGGTTAAATATATTACccagtgtatatattttatagttctAATATTTGTGAAGGCATTCATAAATACCTAAAACTAGTAACTCTTACAAGGACTCTTGTAAGGACTCTTTTAATACTGTAggtgtatttgttttaattttataaaacactgaaaccaTGTTGGCTTtctgtagttaaaaaaaaactaagattattttttcttaaattgtcACTAACACACCCTGTTGTAAACAGACGTGTTCTAAATTCTGTGAGGCAGTTTCCTGGGCAGGAATTTAGTCTAATAAAAGTGTACATTTGCATTTCCTTGCTTTTGGAAAACTACTACCTATATGTTTTGCCCCACATGCATCGATTTCTTCCAGAATGTCAAAGAATCCTCTGAAATACAAGGTTGTTAGAAACTGCTACACCGAAATTACATTATAACACCGACTGGCAGCATTAGCAAAATACCCCAAACAAACCAGTATgctttgttaatttgtttttattaattatctttGTCTATTGCAGAGTGAATTTTAAGTAGattgtgttatttaaatgTATTCTTTAACTGTTTAGTTAAGTGCAATGGAGAGCAGAATTGTATGTGACCCATCCTGTTTCTTTTAGTTCCTGTTGTGAGTCATTTATCTAAACATCtgagatattaaacacatttcattGGTTGATAATGTGCAGATATTTGCAGTTTGTTTTGTCTTGTGAAATGGTCGTGACTAAAGCTGAACTGAAAGATTTTTGATGACAAAGATTCTACATTTTGGTGTAGTTAGCAAGATGGCAATCATGTATggtaaaatcacaaaaataaacaccaataaagaagaaaatataataaatttttACACAATACTACAGtacaaatgatatatatatatatacagtcatatgaaaaagtttgggcacccctattaatctgaatcatttttagttctaaatctttgggtgtttgcaacagccatttcagtttgatatatctaataactgatggacaaaagtacacctcaggcgactctgtctgtggcgtgcttgcagaaatggcttctttcgcatcactctccc

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190640 True 1912 lncRNA 0.32 2 11816566 11819156

Neighbor

gene id symbol gene type direction distance location
e2f5 LOC108437220,LOC108268108 coding upstream 20722 11784077 ~ 11795844 (+)
lrrcc1 lrrcc1 coding upstream 34977 11755661 ~ 11781589 (+)
LOC103026935 ralyl coding upstream 62481 11672608 ~ 11754085 (+)
LOC103030795 NA coding upstream 161158 11644036 ~ 11655408 (+)
retreg1 fam134b coding upstream 209180 11576112 ~ 11607386 (+)
LOC103028056 NA coding downstream 47294 11866450 ~ 11927748 (+)
LOC103028579 NA coding downstream 313031 12132187 ~ 12172466 (+)
LOC103027534 NA coding downstream 360531 12179687 ~ 12464647 (+)
LOC103030385 LOC108437225 coding downstream 888954 12708110 ~ 12732368 (+)
LOC103030306 NA coding downstream 1574221 13393377 ~ 13437203 (+)
G140695 NA non-coding upstream 180966 11629416 ~ 11635600 (+)
G140688 NA non-coding upstream 246364 11570001 ~ 11570202 (+)
G140666 NA non-coding upstream 281291 11532819 ~ 11535275 (+)
G140676 epdr1,LOC108437243,LOC107664036,LOC107558964,LOC107713986,LOC108267170 non-coding upstream 296554 11501056 ~ 11520012 (+)
G140637 NA non-coding upstream 303145 11506664 ~ 11513421 (+)
G140795 NA non-coding downstream 16330 11835486 ~ 11836832 (+)
G140796 NA non-coding downstream 18017 11837173 ~ 11841898 (+)
G140830 NA non-coding downstream 56114 11875270 ~ 11890671 (+)
G140829 NA non-coding downstream 110485 11929641 ~ 11930833 (+)
G140843 NA non-coding downstream 151948 11971104 ~ 11972529 (+)
LOC111194237 NA other upstream 337826 11455485 ~ 11478740 (+)
G140659 NA other upstream 433061 11380098 ~ 11383505 (+)
G140520 NA other upstream 1017675 10798545 ~ 10798891 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 1372026 10427266 ~ 10444540 (+)
G140402 NA other upstream 1416590 10395520 ~ 10399976 (+)
G140931 NA other downstream 418832 12237988 ~ 12240625 (+)
G140930 NA other downstream 559840 12378996 ~ 12381554 (+)
G141086 NA other downstream 922317 12741473 ~ 12743453 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other downstream 1023642 12842798 ~ 12860327 (+)
G141361 tcea1 other downstream 2036447 13855603 ~ 13858605 (+)

Expression


Co-expression Network