G140825


Basic Information

Item Value
gene id G140825
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11835509 ~ 11836832 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190685
GAGGAgccaaacagaaacagaaagtatgaaaacagcacagctacagtTACTCTGTTTCATCTGCAGAAACGGTTAGATTTCAGGCAGATATGTGAGGAGGGTGTTTTCAGGTCTGATCCAGTTTtaactagtttttttttgaTGTGCAAAAAATGTGAAGTTCTGAGAacagccatttaaaaaaaaactctagacAGGCAAAGAAATTATGTTTCTGACTGCACTGAAATCTATAGTACTTTAATTGCTTTCAGGAGCAGattaactgttattattactcTACAGTgccataaaaaagtgtttgcccacccacacattttttagtttttttttttttaatcatacttacatttttctaaTTATCTTTTTAAATCCACCTCGTCCTATGTGAAAACAAAATGATGGAACCTGCTTTACCAGAAAGCAGAATTCATCAGTTCATGGCTTAGGTGTACTTGAGTTctacagcaggacaatgatccaagcACACCAGCACGTccacctcaaaaaaaaaaaaaaaaaaaaaaaaaactattgtagtGAAGTGGCAAGgacaaagtctgattgagatgctgtggcaagATCTTAAACAGGGGtttgtttcccaaaagcatagTTGCTAACTACCTTAGCAACTTACCAATTTACACTTAAACCGTGGTCTAAACCAACAGTGGTAACCAACAGTGGTAACCAACAAAGTCTAAATTATCGTTAAGTCACACGGGTGTTTCCCAAAACCATAGTTCCACCAAACGTTCGCAAACACTGTCGTTAAGTTGCTTAGCTGAAACTACGGCTTGGTAGCTGTGGTTAAAGCTTAGTTTCTGCTGATTACGTCATTGATGACGGAGGACGCAGCTAAAACTATCATCAATCTTCTGACAGgaacatataaaagtaaaatcatTTGAATGAGTAGCTCTCACTGCACTTCTTAATGTACTCCTGTGTTTATGGTATCATGGTTGCAATCATCAATTACCATCGCTATAGGCCATGTGTGCACTGGCTGTGTACTGCTATCCAAATTGTACTTTAATCAGTCgattaatcaataaaatcatCCTTACTTTTATGGCAGGAAAACATGTTGTCAGCAGCAGGGATCCGAACTCACATTCCCTTGTTTAGCACACTTTGTGATGAAACCACACGGGGTGTTAACACACGTTTACCCCCCCTGCGCCACTAAAGCACATTAAGTAATATCTATCCGGCGCCGAGttgtccagcggtctaaagcgctgccactatgagcaggaggttgcaggttcgaacccccgctcatgcagtttgccatcaagctgccggcgttagaggg

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190685 True 1324 lncRNA 0.40 1 11835509 11836832

Neighbor

gene id symbol gene type direction distance location
LOC103027519 NA coding downstream 3245 11819859 ~ 11832264 (-)
trnad-guc_16 NA coding downstream 79910 11755528 ~ 11755599 (-)
rnf182 rnf182 coding downstream 262296 11568053 ~ 11573213 (-)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding downstream 267588 11532828 ~ 11567921 (-)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108437243,LOC108267170,LOC107713986 coding downstream 315472 11514923 ~ 11520037 (-)
LOC103031742 NA coding upstream 108594 11945426 ~ 11968401 (-)
LOC103032062 NA coding upstream 137916 11974748 ~ 12050443 (-)
LOC103032996 NA coding upstream 220003 12056835 ~ 12121276 (-)
LOC103028177 LOC108437218 coding upstream 747045 12583877 ~ 12589743 (-)
stam stam,LOC107664071 coding upstream 759988 12596820 ~ 12612107 (-)
G140823 NA non-coding downstream 16544 11816844 ~ 11818965 (-)
G140822 NA non-coding downstream 28279 11806832 ~ 11807230 (-)
G140798 NA non-coding downstream 143406 11688552 ~ 11692103 (-)
G140748 NA non-coding downstream 304699 11474957 ~ 11530810 (-)
G140754 NA non-coding downstream 311547 11521460 ~ 11523962 (-)
G140815 NA non-coding upstream 345 11837177 ~ 11843218 (-)
G140882 NA non-coding upstream 91030 11927862 ~ 11930836 (-)
G140883 NA non-coding upstream 99037 11935869 ~ 11941666 (-)
G140887 NA non-coding upstream 120673 11957505 ~ 11962348 (-)
LOC111194201 NA non-coding upstream 135225 11972057 ~ 11974644 (-)
G140772 fam134b other downstream 224980 11606235 ~ 11610529 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 1320702 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 1490011 10311097 ~ 10345498 (-)
G140342 NA other downstream 1732052 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 2121472 9697155 ~ 9714037 (-)
G140975 NA other upstream 336863 12173695 ~ 12174994 (-)
G141020 NA other upstream 511727 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 635972 12472804 ~ 12572147 (-)
G141220 NA other upstream 1479059 13315891 ~ 13316365 (-)
G141255 LOC108413406 other upstream 1599799 13436631 ~ 13438896 (-)

Expression


Co-expression Network