G140843


Basic Information

Item Value
gene id G140843
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11971104 ~ 11972529 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190708
AGCAATTTActggtttattgttttatttggatcTCCATTAGCTGTTATCACAATACAGTGGcttacaaaagtattcataccccttgaactttttcacattttgtcaccttacaaccacaaatttaaaataattttattgagactttaagtgatagaccaacacaaagtagcacataattgtgaagtggaacgaaaataaaacatggtttccacatttttaatgccccctttaacaatacttatacttataatacactggattataaagcacaatattaataaacgtcttttttctggtctattgtgatacataaggtgcactggattataaggcacattatgtgacattagtaaggaacaggggtgttgccatgttttccttctaattcagctggtCTTGCCGCTGGTTGATGGAACCTGTaaagctaggctaagctaagtaaacaaaactgaaaaaagcacttccgtttatttacagtaagcttagatttccaagaaGGCTGAGTGCAGTAGCATTTGTGGGTAActgctagtgcttagcgcagttagacAGTGCTACtctgagaaaccctgagagttccggtaagccagggcattattagctagcggtttgtcccacatagcttgttttaacacggtaaacacgcagactgaAAGGCAAAAGAGGTAGCGCTTAGCACGTTTaacgactaatgctaatgctgctccaggctATAGGCCGATAATACTAACGCATCCTATGATTTTTATTTCAAGATTCTTTTTTGTGTCATGAGAGGGAAAGAACTGGTACTGAAGGGAGCGCTAGGGTTGTATGCTTTTGTATGATTTTTCTTAACAAGTGTATTTAATACTGGAATAGAAAATCTGTAAACTTAATATAGTTTGGTCTTAGTTCTCCACTCTTGCTGTATATATAGAACCCTTTATtttgataataaaaatacagaggaCGCATATTGTTGATAGCGTGGCATGCCATGAACTAATTGCAAACACCCTCTCATAGTTTCAATACTGAAAATACATAAGCTTTATTTCATCAAATACTTTTGAATATTTGCTTATTAATAACATGCATTACTACATGTTCTGGGACATGGAAAGGAATGTGCTCTAACAGAATGAATAGGGGACTCCAGCAGAAGAATATGATTAGCTAAAAAATATAGTTATTCTGGAATATTAGTATTTTCATGCAGGAGAAATGCCATTTCTATTGGTTGATTCTATCCCTCCTTTTGAAATATAGGAGCTGCTGAAGTGACCTTCCTCCTGTCATGATTCGGAAtcctggggggaaaaaaaggaaaaatcaaCTCACTACATCCGAACTCTACTAAAATATCAGTGTTCTTAAATGACTACAGTAACTACAATTGTTCA

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU190708 True 1386 lncRNA 0.36 2 11971104 11972529

Neighbor

gene id symbol gene type direction distance location
LOC103028056 NA coding upstream 43356 11866450 ~ 11927748 (+)
e2f5 LOC108437220,LOC108268108 coding upstream 175260 11784077 ~ 11795844 (+)
lrrcc1 lrrcc1 coding upstream 189515 11755661 ~ 11781589 (+)
LOC103026935 ralyl coding upstream 217019 11672608 ~ 11754085 (+)
LOC103030795 NA coding upstream 315696 11644036 ~ 11655408 (+)
LOC103028579 NA coding downstream 159658 12132187 ~ 12172466 (+)
LOC103027534 NA coding downstream 207158 12179687 ~ 12464647 (+)
LOC103030385 LOC108437225 coding downstream 735581 12708110 ~ 12732368 (+)
LOC103030306 NA coding downstream 1420848 13393377 ~ 13437203 (+)
rgs20 rgs20,LOC108440656 coding downstream 1823865 13796394 ~ 13846951 (+)
G140829 NA non-coding upstream 40271 11929641 ~ 11930833 (+)
G140830 NA non-coding upstream 80433 11875270 ~ 11890671 (+)
G140796 NA non-coding upstream 129206 11837173 ~ 11841898 (+)
G140795 NA non-coding upstream 134272 11835486 ~ 11836832 (+)
G140791 NA non-coding upstream 151948 11816566 ~ 11819156 (+)
G140896 NA non-coding downstream 81387 12053916 ~ 12054155 (+)
G140938 NA non-coding downstream 268796 12241325 ~ 12241835 (+)
G140944 NA non-coding downstream 294639 12267168 ~ 12267634 (+)
G140928 NA non-coding downstream 376056 12348585 ~ 12349268 (+)
G140955 NA non-coding downstream 472201 12444730 ~ 12446783 (+)
LOC111194237 NA other upstream 492364 11455485 ~ 11478740 (+)
G140659 NA other upstream 587599 11380098 ~ 11383505 (+)
G140520 NA other upstream 1172213 10798545 ~ 10798891 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 1526564 10427266 ~ 10444540 (+)
G140402 NA other upstream 1571128 10395520 ~ 10399976 (+)
G140931 NA other downstream 265459 12237988 ~ 12240625 (+)
G140930 NA other downstream 406467 12378996 ~ 12381554 (+)
G141086 NA other downstream 768944 12741473 ~ 12743453 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other downstream 870269 12842798 ~ 12860327 (+)
G141361 tcea1 other downstream 1883074 13855603 ~ 13858605 (+)

Expression


Co-expression Network