G140930


Basic Information

Item Value
gene id G140930
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12378996 ~ 12381554 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190824
GCTCATCTCCAACACTGGAACCCTGCTACATTCCAAGACGCCCCGGATCTGGAACTTCATTGACGTGTGTTTGCGGGACGAAGCTCCCCATCCCGCGATGGGCCTGGCTGTCTAAGGCTGACGTGGTTTCGGCTTTCAAAATCCTCCCTCTCCATCCTGACTCCTGGCGCCTTTTCAGAGTCCGTTTTTCAGTTCACCTTGCTTTCGGGTGCAAAGTAACCCCAAGCTTCGACTCCTTTGCTAAGGCGCTCTGCTGGATTTGCTTAACACGGGCCCCAGTTCGTGCTCCACCTCCTGGGTAACTTCGTCATCGGTCCTCCTTCCTCGCCCCTCTCGATGGGTCTTGAAGCCATGACCAGCGCTTTCACTCGCCTCCGTGCCCCGCCGTCGGAGAACTCCGTTGGTCCCTCCACATCTCTCGAGTTTCTTGGGATCTTTCTGGACTCCGCCTCCTTTCAAGTCTCCCCGCCCGTACCTAGCACCGTCTTTCCCCCCGTTCTTTCATTTCCCGCCTCCTCCGCTTGGCTTTTTCGTCCGAGCCCTCCACCATTCGTTATGCTCAACTGATACTGCACGTCAGAGCTCCATTTCTGGCTGTGCCTCCTCTGCAATCGAACGGGTTTTTCTTCTACGCCAACGCAGCTTCCAGCTCTTTTGATATTAAGCTATTCACAGATGCCGCTCCTTCCTCTGGTCGCTTCTGCTTGGCCGGAGAACTTCATCTGCTCCGCCGCGCGATTCTTCTGCGCTCTCTGGACTTATATGCGGTCCTCGTCGCTGCCCTCCTTTGGggacatgaatggtcaaaatctATTCTACTCCACTCTGATCAATCTCGCCGCAGtccacatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagttgctccAAATCGCTAGAAATCTTGCCTTTTATCCGTCGTCTCACTTGGCACTCCATTAAGCATCAGTTCACCACTAAAGCTGTTCACACCTCAGGTCCATTTAATTCTATCGCTGATAGAAtttaattctattctttttcgtTTTCAGTTACAGAAATTCAGATCCTTGGCTCCGCATGCAAATGCAACCCAACCTCGGTACCTTCATTTTCACAAACTACACTTCACCTAACCCCCGTGTAAACGAACTGATCTTCCAAGCTCAACAAACCATCCTTTCAGCCGTCCTTCTACTTAGATTCCTCAGATGCTCAGAATTTACTTCCCTTAAAATCTCCCACAACTCCTTCTCAGCCCCTAATTTCAGATCTCATCATCCTTGACTCAGATACCCTTACCTTCAAGAATGAAGCAAACGGACCAAATTGGCAAAAACCACGATCCTCTATCTATTCAAACTTGACTCACCCCTCAGCCCGTACGAACCACTCGTCCACCACTTAATCTCCGCCTCTTTCAACAAGCATCACCTTTAGATCCTCTGTTCACAACGGAATCTAGTAGTATAATCTCAAAGCACTGGTTCCAACACATCTCCGTCGCATCCTTTCTCCCAGTAGTTACTCACCAGATCAATTCTCCGCCCACTCAGTTTACATCGTGCAGCATCCAACGCCTCCAGACAAGGAATCTCCGAGCACACGATCAAGCTCCCCGGCCGGTGGTCTTCCCAAGCTTATAACCTATACATCCGTTCCCAACCAGACGGTTTGAGACAGGCTCATTCCAAACTAGCTTCCACACAAGCTCCAAttttggggatataactgcacgcttcttcaagcacgcagttcagaactccagcccaaatttccctgagttccctcccctttttccttcttctttctctacctctttaggcgtggtccgcac
>TU190825
GCTCATCTCCAACACTGGAACCCTGCTACATTCCAAGACGCCCCGGATCTGGAACTTCATTGACGTGTGTTTGCGGGACGAAGCTCCCCATCCCGCGATGGGCCTGGCTGTCTAAGGCTGACGTGGTTTCGGCTTTCAAAATCCTCCCTCTCCATCCTGACTCCTGGCGCCTTTTCAGAGTCCGTTTTTCAGTTCACCTTGCTTTCGGGTGCAAAGTAACCCCAAGCTTCGACTCCTTTGCTAAGGCGCTCTGCTGGATTTGCTTAACACGGGCCCCAGTTCGTGCTCCACCTCCTGGGTAACTTCGTCATCGGTCCTCCTTCCTCGCCCCTCTCGATGGGTCTTGAAGCCATGACCAGCGCTTTCACTCGCCTCCGTGCCCCGCCGTCGGAGAACTCCGTTGGTCCCTCCACATCTCTCGAGTTTCTTGGGATCTTTCTGGACTCCGCCTCCTTTCAAGTCTCCCCGCCCGTACCTAGCACCGTCTTTCCCCCCGTTCTTTCATTTCCCGCCTCCTCCGCTTGGCTTTTTCGTCCGAGCCCTCCACCATTCGTTATGCTCAACTGATACTGCACGTCAGAGCTCCATTTCTGGCTGTGCCTCCTCTGCAATCGAACGGGTTTTTCTTCTACGCCAACGCAGCTTCCAGCTCTTTTGATATTAAGCTATTCACAGATGCCGCTCCTTCCTCTGGTCGCTTCTGCTTGGCCGGAGAACTTCATCTGCTCCGCCGCGCGATTCTTCTGCGCTCTCTGGACTTATATGCGGTCCTCGTCGCTGCCCTCCTTTGGggacatgaatggtcaaaatctATTCTACTCCACTCTGATCAATCTCGCCGCAGtccacatcaaaaaaaaaaaaaaaagttgctccAAATCGCTAGAAATCTTGCCTTTTATCCGTCGTCTCACTTGGCACTCCATTAAGCATCAGTTCACCACTAAAGCTGTTCACACCTCAGGTCCATTTAATTCTATCGCTGATAGAAtttaattctattctttttcgtTTTCAGTTACAGAAATTCAGATCCTTGGCTCCGCATGCAAATGCAACCCAACCTCGGTACCTTCATTTTCACAAACTACACTTCACCTAACCCCCGTGTAAACGAACTGATCTTCCAAGCTCAACAAACCATCCTTTCAGCCGTCCTTCTACTTAGATTCCTCAGATGCTCAGAATTTACTTCCCTTAAAATCTCCCACAACTCCTTCTCAGCCCCTAATTTCAGATCTCATCATCCTTGACTCAGATACCCTTACCTTCAAGAATGAAGCAAACGGACCAAATTGGCAAAAACCACGATCCTCTATCTATTCAAACTTGACTCACCCCTCAGCCCGTACGAACCACTCGTCCACCACTTAATCTCCGCCTCTTTCAACAAGCATCACCTTTAGATCCTCTGTTCACAACGGAATCTAGTAGTATAATCTCAAAGCACTGGTTCCAACACATCTCCGTCGCATCCTTTCTCCCAGTAGTTACTCACCAGATCAATTCTCCGCCCACTCAGTTTACATCGTGCAGCATCCAACGCCTCCAGACAAGGAATCTCCGAGCACACGATCAAGCTCCCCGGCCGGTGGTCTTCCCAAGCTTATAACCTATACATCCGTTCCCAACCAGACGGTTTGAGACAGGCTCATTCCAAACTAGCTTCCACACAAGCTCCAAttttggggatataactgcacgcttcttcaagcacgcagttcagaactccagcccaaatttccctgagttccctcccctttttccttcttctttctctacctctttaggcgtggtccgcac
>TU190827
GCTCATCTCCAACACTGGAACCCTGCTACATTCCAAGACGCCCCGGATCTGGAACTTCATTGACGTGTGTTTGCGGGACGAAGCTCCCCATCCCGCGATGGGCCTGGCTGTCTAAGGCTGACGTGGTTTCGGCTTTCAAAATCCTCCCTCTCCATCCTGACTCCTGGCGCCTTTTCAGAGTCCGTTTTTCAGTTCACCTTGCTTTCGGGTGCAAAGTAACCCCAAGCTTCGACTCCTTTGCTAAGGCGCTCTGCTGGATTTGCTTAACACGGGCCCCAGTTCGTGCTCCACCTCCTGGGTAACTTCGTCATCGGTCCTCCTTCCTCGCCCCTCTCGATGGGTCTTGAAGCCATGACCAGCGCTTTCACTCGCCTCCGTGCCCCGCCGTCGGAGAACTCCGTTGGTCCCTCCACATCTCTCGAGTTTCTTGGGATCTTTCTGGACTCCGCCTCCTTTCAAGTCTCCCCGCCCGTACCTAGCACCGTCTTTCCCCCCTCGGCCACTTTATTCACAACCCAAAATCGAACCCAGGGTCGTTCTTTCATTTCCCGCCTCCTCTCTCGCCGTTTCTCACCGGGCTGCAGCACCCGCTCAGCTCCTTGCTGGAGCTTCATGACCTTCATTCTCCATCTACAGCGCCGCCCCCTCTCAGCTCGCGCTGCGGTTCATCTCCAACACTGGAACCCTGCTACATTCCAAGACGCCCCGGATCTGGAACTTCATTGACGTGTGTTTGCGGGACGAAGCTCCCCATCCCGCGATGGGCCTGGCTGTCTAAGGCTGACGTGGTTTCGGCTTTCAAAATCCTCCCTCTCCATCCTGACTCCTGGCGCCTTTTCAGAGTCCGTTTTTCAGTTCACCTTGCTTTCGGGTGCAAAGTAACCCCAAGCTTCGACTCCTTTGCTAAGGCGCTCTGCTGGATTTGCTTAACACGGGCCCCAGTTCGTGCTCCACCTCCTGGGTAACTTCGTCATCGGTCCTCCTTCCTCGCCCCTCTCGATGGGTCTTGAAGCCATGACCAGCGCTTTCACTCGCCTCCGTGCCCCGCCGTCGGAGAACTCCGTTGGTCCCTCCACATCTCTCGAGTTTCTTGGGATCTTTCTGGACTCCGCCTCCTTTCAAGTCTCCCCGCCCGTACCTAGCACCGTCTTTCCCCCCGTTCTTTCATTTCCCGCCTCCTCCGCTTGGCTTTTTCGTCCGAGCCCTCCACCATTCGTTATGCTCAACTGATACTGCACGTCAGAGCTCCATTTCTGGCTGTGCCTCCTCTGCAATCGAACGGGTTTTTCTTCTACGCCAACGCAGCTTCCAGCTCTTTTGATATTAAGCTATTCACAGATGCCGCTCCTTCCTCTGGTCGCTTCTGCTTGGCCGGAGAACTTCATCTGCTCCGCCGCGCGATTCTTCTGCGCTCTCTGGACTTATATGCGGTCCTCGTCGCTGCCCTCCTTTGGggacatgaatggtcaaaatctATTCTACTCCACTCTGATCAATCTCGCCGCAGtccacatcaaaaaaaaaaaaagttgctccAAATCGCTAGAAATCTTGCCTTTTATCCGTCGTCTCACTTGGCACTCCATTAAGCATCAGTTCACCACTAAAGCTGTTCACACCTCAGGTCCATTTAATTCTATCGCTGATAGAAtttaattctattctttttcgtTTTCAGTTACAGAAATTCAGATCCTTGGCTCCGCATGCAAATGCAACCCAACCTCGGTACCTTCATTTTCACAAACTACACTTCACCTAACCCCCGTGTAAACGAACTGATCTTCCAAGCTCAACAAACCATCCTTTCAGCCGTCCTTCTACTTAGATTCCTCAGATGCTCAGAATTTACTTCCCTTAAAATCTCCCACAACTCCTTCTCAGCCCCTAATTTCAGATCTCATCATCCTTGACTCAGATACCCTTACCTTCAAGAATGAAGCAAACGGACCAAATTGGCAAAAACCACGATCCTCTATCTATTCAAACTTGACTCACCCCTCAGCCCGTACGAACCACTCGTCCACCACTTAATCTCCGCCTCTTTCAACAAGCATCACCTTTAGATCCTCTGTTCACAACGGAATCTAGTAGTATAATCTCAAAGCACTGGTTCCAACACATCTCCGTCGCATCCTTTCTCCCAGTAGTTACTCACCAGATCAATTCTCCGCCCACTCAGTTTACATCGTGCAGCATCCAACGCCTCCAGACAAGGAATCTCCGAGCACACGATCAAGCTCCCCGGCCGGTGGTCTTCCCAAGCTTATAACCTATACATCCGTTCCCAACCAGACGGTTTGAGACAGGCTCATTCCAAACTAGCTTCCACACAAGCTCCAAttttggggatataactgcacgcttcttcaagcacgcagttcagaactccagcccaaatttccctgagttccctcccctttttccttcttctttctctacctctttaggcgtggtccgcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190824 False 1856 lncRNA 0.49 2 12378996 12381554
TU190825 False 1803 lncRNA 0.50 4 12378996 12381554
TU190827 True 2463 TUCP 0.52 3 12378996 12381554

Neighbor

gene id symbol gene type direction distance location
LOC103028579 NA coding upstream 206530 12132187 ~ 12172466 (+)
LOC103028056 NA coding upstream 451248 11866450 ~ 11927748 (+)
e2f5 LOC108437220,LOC108268108 coding upstream 583152 11784077 ~ 11795844 (+)
lrrcc1 lrrcc1 coding upstream 597407 11755661 ~ 11781589 (+)
LOC103026935 ralyl coding upstream 624911 11672608 ~ 11754085 (+)
LOC103030385 LOC108437225 coding downstream 326556 12708110 ~ 12732368 (+)
LOC103030306 NA coding downstream 1011823 13393377 ~ 13437203 (+)
rgs20 rgs20,LOC108440656 coding downstream 1414840 13796394 ~ 13846951 (+)
LOC103040707 NA coding downstream 1484733 13866287 ~ 13882845 (+)
gpr141 NA coding downstream 1519354 13900908 ~ 13918612 (+)
G140928 NA non-coding upstream 29728 12348585 ~ 12349268 (+)
G140944 NA non-coding upstream 111362 12267168 ~ 12267634 (+)
G140938 NA non-coding upstream 137161 12241325 ~ 12241835 (+)
G140896 NA non-coding upstream 324841 12053916 ~ 12054155 (+)
G140843 NA non-coding upstream 406467 11971104 ~ 11972529 (+)
G140955 NA non-coding downstream 63176 12444730 ~ 12446783 (+)
G140957 NA non-coding downstream 86782 12468336 ~ 12469122 (+)
G141046 NA non-coding downstream 104726 12486280 ~ 12486571 (+)
G141074 NA non-coding downstream 227092 12608646 ~ 12609502 (+)
G141075 NA non-coding downstream 229744 12611298 ~ 12612090 (+)
G140931 NA other upstream 138371 12237988 ~ 12240625 (+)
LOC111194237 NA other upstream 900256 11455485 ~ 11478740 (+)
G140659 NA other upstream 995491 11380098 ~ 11383505 (+)
G140520 NA other upstream 1580105 10798545 ~ 10798891 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 1934456 10427266 ~ 10444540 (+)
G141086 NA other downstream 359919 12741473 ~ 12743453 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other downstream 461244 12842798 ~ 12860327 (+)
G141361 tcea1 other downstream 1474049 13855603 ~ 13858605 (+)
G141410 NA other downstream 1799111 14180665 ~ 14200998 (+)
G141495 NA other downstream 2146586 14528140 ~ 14530296 (+)

Expression


Co-expression Network