G140944


Basic Information

Item Value
gene id G140944
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12267168 ~ 12267634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU190844
cggactgcgagtacagtaaaccattagagcgggcgcggcccgagataataaacaacgcggactgcgagtacagtaaaccattagagcgggcacggcccgagataataaacacggactgcgagtacagtaaaccattagagcgggcacggcccgagataagaaACAACGCGGGCTGCGAGTACagcaaagcattagagcgggcacggcccgaggtaaacaacgcggacagcgagtcattaaagcattagagcgggcacggcccgagacaaTAAGCAGCGCGGAAGCGAGTACAGAAAAGCAATTGAACGGGTACGGTCCGAGATAAGAAGCAGCGCAATAGGCACTTGCGACGAGCAAAACAGCTGCATAacaatgctttataataaaaaacgTATTACAACCAATTATGAAATT

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU190844 True 414 lncRNA 0.51 2 12267168 12267634

Neighbor

gene id symbol gene type direction distance location
LOC103028579 NA coding upstream 94702 12132187 ~ 12172466 (+)
LOC103028056 NA coding upstream 339420 11866450 ~ 11927748 (+)
e2f5 LOC108437220,LOC108268108 coding upstream 471324 11784077 ~ 11795844 (+)
lrrcc1 lrrcc1 coding upstream 485579 11755661 ~ 11781589 (+)
LOC103026935 ralyl coding upstream 513083 11672608 ~ 11754085 (+)
LOC103030385 LOC108437225 coding downstream 440476 12708110 ~ 12732368 (+)
LOC103030306 NA coding downstream 1125743 13393377 ~ 13437203 (+)
rgs20 rgs20,LOC108440656 coding downstream 1528760 13796394 ~ 13846951 (+)
LOC103040707 NA coding downstream 1598653 13866287 ~ 13882845 (+)
gpr141 NA coding downstream 1633274 13900908 ~ 13918612 (+)
G140938 NA non-coding upstream 25333 12241325 ~ 12241835 (+)
G140896 NA non-coding upstream 213013 12053916 ~ 12054155 (+)
G140843 NA non-coding upstream 294639 11971104 ~ 11972529 (+)
G140829 NA non-coding upstream 336335 11929641 ~ 11930833 (+)
G140830 NA non-coding upstream 376497 11875270 ~ 11890671 (+)
G140928 NA non-coding downstream 80951 12348585 ~ 12349268 (+)
G140955 NA non-coding downstream 177096 12444730 ~ 12446783 (+)
G140957 NA non-coding downstream 200702 12468336 ~ 12469122 (+)
G141046 NA non-coding downstream 218646 12486280 ~ 12486571 (+)
G141074 NA non-coding downstream 341012 12608646 ~ 12609502 (+)
G140931 NA other upstream 26543 12237988 ~ 12240625 (+)
LOC111194237 NA other upstream 788428 11455485 ~ 11478740 (+)
G140659 NA other upstream 883663 11380098 ~ 11383505 (+)
G140520 NA other upstream 1468277 10798545 ~ 10798891 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 1822628 10427266 ~ 10444540 (+)
G140930 NA other downstream 111362 12378996 ~ 12381554 (+)
G141086 NA other downstream 473839 12741473 ~ 12743453 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other downstream 575164 12842798 ~ 12860327 (+)
G141361 tcea1 other downstream 1587969 13855603 ~ 13858605 (+)
G141410 NA other downstream 1913031 14180665 ~ 14200998 (+)

Expression


Co-expression Network