G141087


Basic Information

Item Value
gene id G141087
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12738242 ~ 12785737 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191023
acgcTCGCTCCGTTCCTGCTCAAGGCTCTGGCCTGCACCCGGCCTGCATCTCTTCTTTAAAAAAGTCCTCATGAAAGAACTAAAGATTTATCACAAACTTAGTCCATAGCCCTTTTAAAAAACACCCCACGGCTTTCTAGAAGGAAAAACAAAAGGAGGGGGGTTGGAGGTGCTGTGAAAAAGGGGGATTGCTTGgtgattttcattttcataacAATGAGGAAACTCTTGACCCCTGGACAAAAGGAATCACAATGGTGGAGAACAAAAGCCGAGGCTTCTCTAAACACCTCTAAAGGAGCATCTGAAGAAGGAGTGAACATATACCAACTCATTTTATCATCTTAAGCTTTATCTCACATCctttcctttcattttcttttaaaccaAATTACGAAACCAAACCAAAGACAGCTTTGGTGACGTCTTACcaacgcacacacatacacaccacttgTAGCGAACTGTTATTGAGGTAAGAACTGTTATGGATTGTTAATACACtactataatattattatcatcTGCTTTGTCCATTTGAAACATctactaaaaaactaaaaatcaccGTTTATGAAATCACATCCAAGTAATGTTTCATTTCGTATTGTATCATTTCAAACGGAAGGAGTGAAAGGACTTATTTATCACAgcatgatgatgaagatgaggtGTCGCATAAATGTTAAGAACCTTAAAGCTCTTTCCTCAAGTCAGGCTGGAAGAAGGCGCGTTGTTACCGGAAGCGTTTCAGCTTAAGTTGAACCCGAAGTTCAGTGTCAAAAGCTTCCGTATGTAAACCCATCTTATCTGAAGTTGTTCAGAGCTGTAACATACACAGGGTCCTACAACTCCTCAGCTTAGGCCAACAGCAGACCACAGAGGGCGACAGAGTTCCAGAAATAAGACGACTGCACGAGATCAGGCGTCCTCAGCAGGATGGTGTGGATGTTAAGCATGTGAGTACTGTTACTGGTTTACTAAAGGTGTCTCAGTGGTTCTTCTAATAAGAAATGAAGTGACGGCTCATTTCGTAGCACAACAACAGATCAGATATCTTCAGAATCCAGGGCTGATATGTATGAGTAAATGAAAGCACTACAGCATTTGTCATGTTTAGAGTCGGACCCTGGTGTTTTCACAGATTAAGGGAGTTTTCATACCTATAGTTTGTTGGTTTGCTCTGGTTGAAATCAGTGCACAGGTTTGTAAACTTGGAACATTTTCTCCATGGTTTGAATCAGTTTGTTGTTTACACCTGAATATCTGGACCAAGgtttatgccttttttacactgtgtactgaatattttgtctgatcagttttggtttcacatcATACTAAACTTTTTGAGTTTAGTGAGTGGACTAAAGAACTTCACTATATCTTGGTGTCACCAGCTACGAGGGCCGTCTTTTTCtatactatattttaatttgtttgtaaAATGTTGGTTGTGATTTGGCGAGTTGCTTTGATGAATTCTATCTATCCGTCAGATCTGTCAGATTCTATCTACCCTTCACTCccaaatttcctttttttttttctttcgaatttttcccattttctccccaatgtacacacggccaattacccgacccactcattaggactccccctatcactagtgatgccccaacacaccaggagagtgaagactaacacatacttcctccaaaacatgtgaagccagccaccacttctttttgagctgctgctgatgcaacattggcgagcagcatcacagcgcgtttggaggaaagcgcagcaacacggttccggtacatcagctcacagacgccctgtgctgcagacatcaacctaggagtgatgtggggagagagcgccatctacccacccggagggagcagggccaattttgctccctcaatgttcttttttctttaggtTGGTTTAATAACTGACAACTTTCTGTAATCGGTTTGTGTAATAAAGTCTGAACCTTCTAGAGAAagtgtttcacactgcagaagaTTATCCCTgctttataaacagaaataaaaaaaagaatcagagAAAAATCTGTTGCACACaatttgtacttaaaaaattTGCAATTGTGACATTTTTTCTCGCCAACCAATGTGAAGTATAGAGGGATGTAGCCTATGTTATGTCAGGATTTAggaaagttcttttttttttttttttttttttttgtgtgaagcCAAAACTAACTGGATCAGACTCCAGTCCAGACATTTAAGTgttaatcaatttaaaaaaaaaagttcatttagAATGGTAGCATCAGAATTGTTCACAGTAGTGGTGATAGGACGTTTATCACCTTTTACAGCAATGTGACAGAAAGCTGTTTTCAAGAAATGGTTATGAAACTACTGGCTGGTTTAAAGAGATTAAGGCCCAATTGTTGCAtataaaacacagaacacagaagGAGTACACTGTTCACTCATTtaggataataaataaatgatatatctatattttagtTGTAGATGCCTGCCTTGTTGACAGACCACCACTGTGTAATTATGGTGAGCAATGGCGTCCAATCACAAGGCAGATGAGCTACAACGGCAGGCGTTTGCTTCTGTTAGCCAgtaacagaaagctgaggctgcagctTGTGACTAACATGCATACATTAACTGTACGTGTATATTTgaaggggagtcagattctggTAGGGAGTCTGAAtttggcacaacactgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191023 True 2704 lncRNA 0.40 2 12738242 12785737

Neighbor

gene id symbol gene type direction distance location
LOC103030385 LOC108437225 coding upstream 5874 12708110 ~ 12732368 (+)
LOC103027534 NA coding upstream 273595 12179687 ~ 12464647 (+)
LOC103028579 NA coding upstream 565776 12132187 ~ 12172466 (+)
LOC103028056 NA coding upstream 810494 11866450 ~ 11927748 (+)
e2f5 LOC108437220,LOC108268108 coding upstream 942398 11784077 ~ 11795844 (+)
LOC103030306 NA coding downstream 607640 13393377 ~ 13437203 (+)
rgs20 rgs20,LOC108440656 coding downstream 1010657 13796394 ~ 13846951 (+)
LOC103040707 NA coding downstream 1080550 13866287 ~ 13882845 (+)
gpr141 NA coding downstream 1115171 13900908 ~ 13918612 (+)
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding downstream 1152548 13938285 ~ 14142611 (+)
G141075 NA non-coding upstream 126152 12611298 ~ 12612090 (+)
G141074 NA non-coding upstream 128740 12608646 ~ 12609502 (+)
G141046 NA non-coding upstream 251671 12486280 ~ 12486571 (+)
G140957 NA non-coding upstream 269120 12468336 ~ 12469122 (+)
G140955 NA non-coding upstream 291459 12444730 ~ 12446783 (+)
G141099 NA non-coding downstream 29130 12814867 ~ 12816236 (+)
G141178 NA non-coding downstream 199130 12984867 ~ 12990434 (+)
G141185 NA non-coding downstream 245035 13030772 ~ 13033593 (+)
G141188 NA non-coding downstream 255053 13040790 ~ 13041271 (+)
G141189 NA non-coding downstream 313349 13099086 ~ 13115018 (+)
G140930 NA other upstream 356688 12378996 ~ 12381554 (+)
G140931 NA other upstream 497617 12237988 ~ 12240625 (+)
LOC111194237 NA other upstream 1259502 11455485 ~ 11478740 (+)
G140659 NA other upstream 1354737 11380098 ~ 11383505 (+)
G140520 NA other upstream 1939351 10798545 ~ 10798891 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other downstream 57061 12842798 ~ 12860327 (+)
G141361 tcea1 other downstream 1069866 13855603 ~ 13858605 (+)
G141410 NA other downstream 1394928 14180665 ~ 14200998 (+)
G141495 NA other downstream 1742403 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 1993444 14779181 ~ 14784812 (+)

Expression


Co-expression Network